Information for 9-VCACACACTATGC (Motif 18)

T C A G A G T C C G T A A G T C C G T A A G T C G T C A A T G C A G C T C G T A C G A T A T C G A G T C
Reverse Opposite:
A C T G A T G C C G T A A C G T C T G A A T C G A C G T C T A G C G A T A C T G A C G T A C T G A G C T
p-value:1e-6
log p-value:-1.442e+01
Information Content per bp:1.777
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif15.00%
Number of Background Sequences with motif37.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets34.5 +/- 27.1bp
Average Position of motif in Background39.4 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----VCACACACTATGC
AGCGGCACACACGCAA-
 A C G T A C G T A C G T A C G T T C A G A G T C C G T A A G T C C G T A A G T C G T C A A T G C A G C T C G T A C G A T A T C G A G T C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----VCACACACTATGC
CGAAGCACACAAAATA-
 A C G T A C G T A C G T A C G T T C A G A G T C C G T A A G T C C G T A A G T C G T C A A T G C A G C T C G T A C G A T A T C G A G T C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--VCACACACTATGC
GGCCACACCCAN---
 A C G T A C G T T C A G A G T C C G T A A G T C C G T A A G T C G T C A A T G C A G C T C G T A C G A T A T C G A G T C
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T

Klf1/MA0493.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--VCACACACTATGC
GGCCACACCCA----
 A C G T A C G T T C A G A G T C C G T A A G T C C G T A A G T C G T C A A T G C A G C T C G T A C G A T A T C G A G T C
C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--VCACACACTATGC
AAGCACTTAA-----
 A C G T A C G T T C A G A G T C C G T A A G T C C G T A A G T C G T C A A T G C A G C T C G T A C G A T A T C G A G T C
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--VCACACACTATGC
MRSCACTYAA-----
 A C G T A C G T T C A G A G T C C G T A A G T C C G T A A G T C G T C A A T G C A G C T C G T A C G A T A T C G A G T C
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-VCACACACTATGC
ACCACATCCTGT--
 A C G T T C A G A G T C C G T A A G T C C G T A A G T C G T C A A T G C A G C T C G T A C G A T A T C G A G T C
T G C A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A G T C C A G T A T C G A G C T A C G T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--VCACACACTATGC-
NAGNACANNNTGTNCT
 A C G T A C G T T C A G A G T C C G T A A G T C C G T A A G T C G T C A A T G C A G C T C G T A C G A T A T C G A G T C A C G T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

ZNF143/MA0088.2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:VCACACACTATGC----
-TACCCACAATGCATTG
 T C A G A G T C C G T A A G T C C G T A A G T C G T C A A T G C A G C T C G T A C G A T A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----VCACACACTATGC
NWAACCACADNN-----
 A C G T A C G T A C G T A C G T T C A G A G T C C G T A A G T C C G T A A G T C G T C A A T G C A G C T C G T A C G A T A T C G A G T C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T