Information for 1-TTTTACAGGC (Motif 6)

A C G T A G C T A C G T A G C T C G T A A G T C C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C G T A C A C G T C T A G A C G T C T G A C G T A C T G A G T C A
p-value:1e-7
log p-value:-1.742e+01
Information Content per bp:1.877
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif8.70%
Number of Background Sequences with motif24.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets46.8 +/- 24.4bp
Average Position of motif in Background50.8 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TTTTACAGGC
CCTTTTATAGNC
 A C G T A C G T A C G T A G C T A C G T A G C T C G T A A G T C C G T A A C T G A C T G A G T C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTTTACAGGC
TTTTATKRGG
 A C G T A G C T A C G T A G C T C G T A A G T C C G T A A C T G A C T G A G T C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTTTACAGGC
NTTTTATTGG-
 A C G T A C G T A G C T A C G T A G C T C G T A A G T C C G T A A C T G A C T G A G T C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTTTACAGGC
TTTAATTGCN
 A C G T A G C T A C G T A G C T C G T A A G T C C G T A A C T G A C T G A G T C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

HOXC13/MA0907.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTTTACAGGC
NTTTTACGAGN
 A C G T A C G T A G C T A C G T A G C T C G T A A G T C C G T A A C T G A C T G A G T C
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TTTTACAGGC
-TTGACAGC-
 A C G T A G C T A C G T A G C T C G T A A G T C C G T A A C T G A C T G A G T C
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTTACAGGC
TTTTATTRGN
 A C G T A G C T A C G T A G C T C G T A A G T C C G T A A C T G A C T G A G T C
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTTTACAGGC
TTTTTATTGG-
 A C G T A C G T A G C T A C G T A G C T C G T A A G T C C G T A A C T G A C T G A G T C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTTACAGGC----
NNATTGACAGGTGCTT
 A C G T A C G T A C G T A G C T A C G T A G C T C G T A A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTTTACAGGC
NTTTTATTGG-
 A C G T A C G T A G C T A C G T A G C T C G T A A G T C C G T A A C T G A C T G A G T C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T