Information for 13-TGACATTCACACT (Motif 17)

A C G T A C T G C G T A A G T C C G T A C G A T A C G T A G T C C G T A A G T C C G T A A G T C A C G T
Reverse Opposite:
G T C A A C T G A C G T A C T G A C G T A C T G C G T A C G T A A C G T A C T G A C G T G T A C C G T A
p-value:1e-4
log p-value:-1.080e+01
Information Content per bp:1.942
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.5 +/- 24.0bp
Average Position of motif in Background79.9 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX21/MA0690.1/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:TGACATTCACACT--
-----TTCACACCTT
 A C G T A C T G C G T A A G T C C G T A C G A T A C G T A G T C C G T A A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T

TBR1/MA0802.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TGACATTCACACT-
----TTTCACACCT
 A C G T A C T G C G T A A G T C C G T A C G A T A C G T A G T C C G T A A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGACATTCACACT
SCTGTCAVTCAV---
 A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G A T A C G T A G T C C G T A A G T C C G T A A G T C A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGACATTCACACT--
GACCACATTCATACAAT
 A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G A T A C G T A G T C C G T A A G T C C G T A A G T C A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:5
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TGACATTCACACT-
----KTTCACACCT
 A C G T A C T G C G T A A G T C C G T A C G A T A C G T A G T C C G T A A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T

TBX2/MA0688.1/Jaspar

Match Rank:6
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TGACATTCACACT--
----TTTCACACCTN
 A C G T A C T G C G T A A G T C C G T A C G A T A C G T A G T C C G T A A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

MGA/MA0801.1/Jaspar

Match Rank:7
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:TGACATTCACACT-
------TCACACCT
 A C G T A C T G C G T A A G T C C G T A C G A T A C G T A G T C C G T A A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

EOMES/MA0800.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGACATTCACACT--
--NTTTTCACACCTT
 A C G T A C T G C G T A A G T C C G T A C G A T A C G T A G T C C G T A A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:9
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TGACATTCACACT-
----ATTAACACCT
 A C G T A C T G C G T A A G T C C G T A C G A T A C G T A G T C C G T A A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGACATTCACACT
NCTGTCAATCAN---
 A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G A T A C G T A G T C C G T A A G T C C G T A A G T C A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T