Information for 1-CTCATDCAACCTGCTG (Motif 1)

A G T C A G C T A G T C C T G A A C G T C A T G A G T C G T C A G T C A A G T C A G T C A C G T A C T G A G T C A C G T C T A G
Reverse Opposite:
A G T C C G T A C T A G A G T C C G T A A C T G A C T G A C G T A C G T A C T G G A T C G T C A A G C T A C T G C T G A C T A G
p-value:1e-11
log p-value:-2.622e+01
Information Content per bp:1.813
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif5.19%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.0 +/- 20.3bp
Average Position of motif in Background43.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:CTCATDCAACCTGCTG--
------CCCCCTGCTGTG
 A G T C A G C T A G T C C T G A A C G T C A T G A G T C G T C A G T C A A G T C A G T C A C G T A C T G A G T C A C G T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CTCATDCAACCTGCTG---
----GGCCYCCTGCTGDGH
 A G T C A G C T A G T C C T G A A C G T C A T G A G T C G T C A G T C A A G T C A G T C A C G T A C T G A G T C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

SCRT1/MA0743.1/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CTCATDCAACCTGCTG---
----ANCCACCTGTTGCNC
 A G T C A G C T A G T C C T G A A C G T C A T G A G T C G T C A G T C A A G T C A G T C A C G T A C T G A G T C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C

SCRT2/MA0744.1/Jaspar

Match Rank:4
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:CTCATDCAACCTGCTG---
------CCACCTGTTGCAT
 A G T C A G C T A G T C C T G A A C G T C A T G A G T C G T C A G T C A A G T C A G T C A C G T A C T G A G T C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T

SNAI2/MA0745.1/Jaspar

Match Rank:5
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:CTCATDCAACCTGCTG
------NCACCTGTN-
 A G T C A G C T A G T C C T G A A C G T C A T G A G T C G T C A G T C A A G T C A G T C A C G T A C T G A G T C A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CTCATDCAACCTGCTG--
----GACCCCCCGCTGTG
 A G T C A G C T A G T C C T G A A C G T C A T G A G T C G T C A G T C A A G T C A G T C A C G T A C T G A G T C A C G T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CTCATDCAACCTGCTG
----SNGCACCTGCHS
 A G T C A G C T A G T C C T G A A C G T C A T G A G T C G T C A G T C A A G T C A G T C A C G T A C T G A G T C A C G T C T A G
A C G T A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CTCATDCAACCTGCTG---
----GACCCCCCGCTGTGC
 A G T C A G C T A G T C C T G A A C G T C A T G A G T C G T C A G T C A A G T C A G T C A C G T A C T G A G T C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.60
Offset:9
Orientation:forward strand
Alignment:CTCATDCAACCTGCTG---
---------CCTGCTGAGH
 A G T C A G C T A G T C C T G A A C G T C A T G A G T C G T C A G T C A A G T C A G T C A C G T A C T G A G T C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTCATDCAACCTGCTG---
----GACCCCCCGCTGCGC
 A G T C A G C T A G T C C T G A A C G T C A T G A G T C G T C A G T C A A G T C A G T C A C G T A C T G A G T C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C