Information for 2-GGGACAGAGA (Motif 8)

C T A G C T A G T C A G G T C A A G T C C G T A A C T G C T G A A C T G C G T A
Reverse Opposite:
A C G T A G T C A G C T A G T C A C G T A C T G A C G T A G T C A G T C A G T C
p-value:1e-5
log p-value:-1.375e+01
Information Content per bp:1.868
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif7.95%
Number of Background Sequences with motif285.9
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets59.8 +/- 21.0bp
Average Position of motif in Background51.4 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-2.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GGGACAGAGA
CCAGGAACAG---
 A C G T A C G T A C G T C T A G C T A G T C A G G T C A A G T C C G T A A C T G C T G A A C T G C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GGGACAGAGA
GGAACAAAGR
 C T A G C T A G T C A G G T C A A G T C C G T A A C T G C T G A A C T G C G T A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGGACAGAGA-----
NNNACCGAGAGTNNN
 C T A G C T A G T C A G G T C A A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGGACAGAGA-----
GNNACCGAGAATNNN
 C T A G C T A G T C A G G T C A A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGGACAGAGA
--CACAGN--
 C T A G C T A G T C A G G T C A A G T C C G T A A C T G C T G A A C T G C G T A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGGACAGAGA
TGGAACAGMA-
 A C G T C T A G C T A G T C A G G T C A A G T C C G T A A C T G C T G A A C T G C G T A
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGGACAGAGA
VRRACAAWGG
 C T A G C T A G T C A G G T C A A G T C C G T A A C T G C T G A A C T G C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GGGACAGAGA
---ACAAAG-
 C T A G C T A G T C A G G T C A A G T C C G T A A C T G C T G A A C T G C G T A
A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGGACAGAGA-----
TTGACCGAGAATTCC
 C T A G C T A G T C A G G T C A A G T C C G T A A C T G C T G A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGGACAGAGA-
AGGTGNCAGACAG
 A C G T A C G T C T A G C T A G T C A G G T C A A G T C C G T A A C T G C T G A A C T G C G T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G