Information for 3-CACAYACTAACCM (Motif 6)

A G T C G T C A T A G C C G T A G A C T C T G A A T G C A C G T C G T A C G T A G T A C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G C G A T C G A T C G T A A T C G A G C T C T G A A C G T A C T G A C G T A C T G
p-value:1e-6
log p-value:-1.518e+01
Information Content per bp:1.766
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.55%
Number of Background Sequences with motif28.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets41.9 +/- 24.4bp
Average Position of motif in Background58.9 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CACAYACTAACCM
AGCGGCACACACGCAA--
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A T A G C C G T A G A C T C T G A A T G C A C G T C G T A C G T A G T A C A G T C G T C A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CACAYACTAACCM-
---NNACTTACCTN
 A G T C G T C A T A G C C G T A G A C T C T G A A T G C A C G T C G T A C G T A G T A C A G T C G T C A A C G T
A C G T A C G T A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

PH0035.1_Gsc/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CACAYACTAACCM-----
-AATCGTTAATCCCTTTA
 A G T C G T C A T A G C C G T A G A C T C T G A A T G C A C G T C G T A C G T A G T A C A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CACAYACTAACCM
TGACCTNTAGTAACCC
 A C G T A C G T A C G T A G T C G T C A T A G C C G T A G A C T C T G A A T G C A C G T C G T A C G T A G T A C A G T C G T C A
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CACAYACTAACCM
-----GCTAATCC
 A G T C G T C A T A G C C G T A G A C T C T G A A T G C A C G T C G T A C G T A G T A C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CACAYACTAACCM--
---WWTRTAAACAVG
 A G T C G T C A T A G C C G T A G A C T C T G A A T G C A C G T C G T A C G T A G T A C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

ZNF410/MA0752.1/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CACAYACTAACCM
TCCATCCCATAATACTC-
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A T A G C C G T A G A C T C T G A A T G C A C G T C G T A C G T A G T A C A G T C G T C A
A C G T T G A C G A T C G C T A C A G T G T A C G T A C A T G C G T C A A G C T G T C A T C G A G A C T C T G A G T A C A G C T G T A C A C G T

FOXD1/MA0031.1/Jaspar

Match Rank:8
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CACAYACTAACCM-
------GTAAACAT
 A G T C G T C A T A G C C G T A G A C T C T G A A T G C A C G T C G T A C G T A G T A C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T C A C G T A T C G A G A T C C G T A C G A T

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:9
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CACAYACTAACCM---
----NDGTAAACARRN
 A G T C G T C A T A G C C G T A G A C T C T G A A T G C A C G T C G T A C G T A G T A C A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T A G T C A G A C G T C G T A C G T A C G T A A G T C C G T A T C A G T C A G C T G A

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----CACAYACTAACCM
CGAAGCACACAAAATA--
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A T A G C C G T A G A C T C T G A A T G C A C G T C G T A C G T A G T A C A G T C G T C A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T