Information for 4-CCCKGACCKTRCTRKT (Motif 4)

A G T C A G T C A G T C A C G T A T C G G T C A A G T C A G T C A C G T A C G T C T A G A G T C A C G T T C A G A C G T A C G T
Reverse Opposite:
G T C A G T A C A G T C G T C A A C T G A G C T C G T A G T C A A C T G A C T G A C G T A T G C G T C A A C T G A C T G A C T G
p-value:1e-7
log p-value:-1.793e+01
Information Content per bp:1.849
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.55%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets35.5 +/- 18.0bp
Average Position of motif in Background48.6 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCCKGACCKTRCTRKT
-BNTGDCCTTG-----
 A G T C A G T C A G T C A C G T A T C G G T C A A G T C A G T C A C G T A C G T C T A G A G T C A C G T T C A G A C G T A C G T
A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCCKGACCKTRCTRKT
TGACCTTGACCT-------
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T C G G T C A A G T C A G T C A C G T A C G T C T A G A G T C A C G T T C A G A C G T A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCCKGACCKTRCTRKT
--NTGACCTTGA----
 A G T C A G T C A G T C A C G T A T C G G T C A A G T C A G T C A C G T A C G T C T A G A G T C A C G T T C A G A C G T A C G T
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCCKGACCKTRCTRKT
TGACCTTGACCT-------
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T C G G T C A A G T C A G T C A C G T A C G T C T A G A G T C A C G T T C A G A C G T A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CCCKGACCKTRCTRKT
---TGACCTTGAT---
 A G T C A G T C A G T C A C G T A T C G G T C A A G T C A G T C A C G T A C G T C T A G A G T C A C G T T C A G A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCCKGACCKTRCTRKT
-NNGCACCTTTCTCC-
 A G T C A G T C A G T C A C G T A T C G G T C A A G T C A G T C A C G T A C G T C T A G A G T C A C G T T C A G A C G T A C G T
A C G T A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCCKGACCKTRCTRKT
--ATGACCTTGA----
 A G T C A G T C A G T C A C G T A T C G G T C A A G T C A G T C A C G T A C G T C T A G A G T C A C G T T C A G A C G T A C G T
A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CCCKGACCKTRCTRKT
---TGACCT-------
 A G T C A G T C A G T C A C G T A T C G G T C A A G T C A G T C A C G T A C G T C T A G A G T C A C G T T C A G A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCCKGACCKTRCTRKT
---TGACCTYA-----
 A G T C A G T C A G T C A C G T A T C G G T C A A G T C A G T C A C G T A C G T C T A G A G T C A C G T T C A G A C G T A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CCCKGACCKTRCTRKT
--GTGACCTT------
 A G T C A G T C A G T C A C G T A T C G G T C A A G T C A G T C A C G T A C G T C T A G A G T C A C G T T C A G A C G T A C G T
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T