Information for 1-TRGAKGGMGCTRR (Motif 3)

A C G T C T A G A C T G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T C T A G C T G A
Reverse Opposite:
A G C T A G T C C G T A A C T G A G T C C A G T A G T C A G T C G T A C A C G T A G T C A G T C C G T A
p-value:1e-8
log p-value:-1.866e+01
Information Content per bp:1.849
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.41%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.6 +/- 22.7bp
Average Position of motif in Background33.9 +/- 16.1bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TRGAKGGMGCTRR
----CGGAGC---
 A C G T C T A G A C T G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T C T A G C T G A
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TRGAKGGMGCTRR--
---RGGGCACTAACY
 A C G T C T A G A C T G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T C T A G C T G A A C G T A C G T
A C G T A C G T A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------TRGAKGGMGCTRR
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T C T A G C T G A
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:TRGAKGGMGCTRR
-------NGCTN-
 A C G T C T A G A C T G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T C T A G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TRGAKGGMGCTRR--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T C T A G C T G A A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------TRGAKGGMGCTRR
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T C T A G C T G A
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TRGAKGGMGCTRR
RGKGGGCGGAGC---
 A C G T A C G T A C G T C T A G A C T G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T C T A G C T G A
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TRGAKGGMGCTRR----
CCTTCGGCGCCAAAAGG
 A C G T C T A G A C T G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T C T A G C T G A A C G T A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TRGAKGGMGCTRR---
-AGATGCTRCTRCCHT
 A C G T C T A G A C T G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T C T A G C T G A A C G T A C G T A C G T
A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TRGAKGGMGCTRR----
AGCTCGGCGCCAAAAGC
 A C G T C T A G A C T G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T C T A G C T G A A C G T A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C