Information for 8-CCCATTGCGTGCG (Motif 12)

A G T C A G T C G T A C C G T A A G C T A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C C G T A A G T C C T A G A G T C C G T A C T G A C G A T A C T G A C T G A C T G
p-value:1e-5
log p-value:-1.265e+01
Information Content per bp:1.892
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.0 +/- 30.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:CCCATTGCGTGCG-
----TTGCGTGCVA
 A G T C A G T C G T A C C G T A A G C T A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCCATTGCGTGCG
NNNCCATTGTGTNAN
 A C G T A C G T A G T C A G T C G T A C C G T A A G C T A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C T G
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:3
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CCCATTGCGTGCG
-----TGCGTG--
 A G T C A G T C G T A C C G T A A G C T A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C T G
A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCCATTGCGTGCG---
NNNNTTGTGTGCTTNN
 A G T C A G T C G T A C C G T A A G C T A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C G T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCCATTGCGTGCG---
-CCATTGTATGCAAAT
 A G T C A G T C G T A C C G T A A G C T A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C G T A C G T A C G T
A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCCATTGCGTGCG
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A G T C A G T C G T A C C G T A A G C T A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C T G
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CCCATTGCGTGCG--
-----TGCGTGGGYG
 A G T C A G T C G T A C C G T A A G C T A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T T C A G G A T C A C T G A C G T C T A G A C T G A C T G G A C T C T A G

EGR4/MA0733.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCCATTGCGTGCG-----
--AANTGCGTGGGCGTNN
 A G T C A G T C G T A C C G T A A G C T A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G T A C G T A A C G T T C A G T A G C T C A G C A G T T C A G A C T G T C A G G T A C T C A G C A G T C T G A C T G A

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:9
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CCCATTGCGTGCG
-----TACGTGCV
 A G T C A G T C G T A C C G T A A G C T A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C

EGR2/MA0472.2/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CCCATTGCGTGCG---
-----TGCGTGGGCGT
 A G T C A G T C G T A C C G T A A G C T A C G T A C T G A G T C A C T G A C G T A C T G A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T C A G G T A C T C A G A C G T T C A G A C T G T C A G G A T C T C A G C A G T