Information for 2-CTGAAAGGCG (Motif 7)

A G T C C A G T A C T G G T C A T C G A C G T A C T A G A C T G A G T C A C T G
Reverse Opposite:
G T A C C T A G T G A C A G T C A C G T A G C T A C G T A G T C G T C A T C A G
p-value:1e-10
log p-value:-2.466e+01
Information Content per bp:1.834
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif86.8
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets51.8 +/- 32.6bp
Average Position of motif in Background54.3 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTGAAAGGCG-------
--CAAAGGCGTGGCCAG
 A G T C C A G T A C T G G T C A T C G A C G T A C T A G A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

PH0141.1_Pknox2/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTGAAAGGCG---
NNATTGACAGGTGCTT
 A C G T A C G T A C G T A G T C C A G T A C T G G T C A T C G A C G T A C T A G A C T G A G T C A C T G A C G T A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGAAAGGCG
TTGACAGC--
 A G T C C A G T A C T G G T C A T C G A C G T A C T A G A C T G A G T C A C T G
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CTGAAAGGCG
GGTGYTGACAGS--
 A C G T A C G T A C G T A C G T A G T C C A G T A C T G G T C A T C G A C G T A C T A G A C T G A G T C A C T G
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T A C G T

PB0136.1_IRC900814_2/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGAAAGGCG-----
ATGGAAAGTCGTAAAA
 A C G T A G T C C A G T A C T G G T C A T C G A C G T A C T A G A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGAAAGGCG---
GGAGAAAGGTGCGA
 A C G T A G T C C A G T A C T G G T C A T C G A C G T A C T A G A C T G A G T C A C T G A C G T A C G T A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTGAAAGGCG
TGAGTGACAGSC-
 A C G T A C G T A C G T A G T C C A G T A C T G G T C A T C G A C G T A C T A G A C T G A G T C A C T G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGAAAGGCG
VBTGWCAGCB-
 A C G T A G T C C A G T A C T G G T C A T C G A C G T A C T A G A C T G A G T C A C T G
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTGAAAGGCG
GAAAGTGAAAGT--
 A C G T A C G T A C G T A C G T A G T C C A G T A C T G G T C A T C G A C G T A C T A G A C T G A G T C A C T G
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGAAAGGCG---
-TGACAGGTGTCA
 A G T C C A G T A C T G G T C A T C G A C G T A C T A G A C T G A G T C A C T G A C G T A C G T A C G T
A C G T C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A