Information for 1-ATGTCAGGTATCA (Motif 1)

C T G A A C G T A C T G A C G T G T A C C G T A A C T G A T C G C G A T G C T A C G A T A T G C G T C A
Reverse Opposite:
A C G T A T C G C G T A C A G T C G T A A T G C G T A C A C G T A C T G T C G A A G T C C G T A A G C T
p-value:1e-18
log p-value:-4.241e+01
Information Content per bp:1.809
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.4 +/- 25.7bp
Average Position of motif in Background57.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:ATGTCAGGTATCA
-TGACAGGTGTCA
 C T G A A C G T A C T G A C G T G T A C C G T A A C T G A T C G C G A T G C T A C G A T A T G C G T C A
A C G T C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A

PKNOX1/MA0782.1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:ATGTCAGGTATCA
-TGACAGGTGTCA
 C T G A A C G T A C T G A C G T G T A C C G T A A C T G A T C G C G A T G C T A C G A T A T G C G T C A
A C G T G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A

TGIF2/MA0797.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ATGTCAGGTATCA
-TGACAGCTGTCA
 C T G A A C G T A C T G A C G T G T A C C G T A A C T G A T C G C G A T G C T A C G A T A T G C G T C A
A C G T G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A

TGIF1/MA0796.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ATGTCAGGTATCA
-TGACAGCTGTCA
 C T G A A C G T A C T G A C G T G T A C C G T A A C T G A T C G C G A T G C T A C G A T A T G C G T C A
A C G T G C A T T C A G T C G A A G T C T C G A A C T G T A G C A G C T T A C G G C A T G T A C C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ATGTCAGGTATCA
-TGTCANYT----
 C T G A A C G T A C T G A C G T G T A C C G T A A C T G A T C G C G A T G C T A C G A T A T G C G T C A
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATGTCAGGTATCA
NTGTCAN------
 C T G A A C G T A C T G A C G T G T A C C G T A A C T G A T C G C G A T G C T A C G A T A T G C G T C A
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ATGTCAGGTATCA
RHTGWCAR------
 A C G T C T G A A C G T A C T G A C G T G T A C C G T A A C T G A T C G C G A T G C T A C G A T A T G C G T C A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATGTCAGGTATCA
VBTGWCAGCB----
 A C G T C T G A A C G T A C T G A C G T G T A C C G T A A C T G A T C G C G A T G C T A C G A T A T G C G T C A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ATGTCAGGTATCA
GGATTGACAGGTCNTT
 A C G T A C G T A C G T C T G A A C G T A C T G A C G T G T A C C G T A A C T G A T C G C G A T G C T A C G A T A T G C G T C A
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

PH0104.1_Meis2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ATGTCAGGTATCA
NTATTGACAGGTNNTN
 A C G T A C G T A C G T C T G A A C G T A C T G A C G T G T A C C G T A A C T G A T C G C G A T G C T A C G A T A T G C G T C A
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T