Information for 3-GRCMGRYWGRSAK (Motif 6)

A C T G C T A G A G T C G T A C A C T G C T A G A G C T C G A T A C T G C T A G T A C G C G T A A C G T
Reverse Opposite:
G T C A A C G T A T G C A G T C A G T C C G T A C T G A A G T C A G T C A C T G A C T G A G T C A G T C
p-value:1e-5
log p-value:-1.273e+01
Information Content per bp:1.774
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif39.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets33.2 +/- 15.3bp
Average Position of motif in Background51.8 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GRCMGRYWGRSAK---
NGTAGGTTGGCATNNN
 A C T G C T A G A G T C G T A C A C T G C T A G A G C T C G A T A C T G C T A G T A C G C G T A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GRCMGRYWGRSAK
TGGCAGNCTGCCAG
 A C G T A C T G C T A G A G T C G T A C A C T G C T A G A G C T C G A T A C T G C T A G T A C G C G T A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GRCMGRYWGRSAK
----GGTTGGCAT
 A C T G C T A G A G T C G T A C A C T G C T A G A G C T C G A T A C T G C T A G T A C G C G T A A C G T
A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GRCMGRYWGRSAK
TGGCAGTTGG----
 A C G T A C T G C T A G A G T C G T A C A C T G C T A G A G C T C G A T A C T G C T A G T A C G C G T A A C G T
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GRCMGRYWGRSAK-
--BTGABTGACAGS
 A C T G C T A G A G T C G T A C A C T G C T A G A G C T C G A T A C T G C T A G T A C G C G T A A C G T A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PB0149.1_Myb_2/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GRCMGRYWGRSAK
NNNTGGCAGTTGGTNN-
 A C G T A C G T A C G T A C G T A C T G C T A G A G T C G T A C A C T G C T A G A G C T C G A T A C T G C T A G T A C G C G T A A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GRCMGRYWGRSAK-
--NTGATTGACAGN
 A C T G C T A G A G T C G T A C A C T G C T A G A G C T C G A T A C T G C T A G T A C G C G T A A C G T A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GRCMGRYWGRSAK-
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G C T A G A G T C G T A C A C T G C T A G A G C T C G A T A C T G C T A G T A C G C G T A A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Myb/MA0100.2/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GRCMGRYWGRSAK
TGGCAGTTGN----
 A C G T A C T G C T A G A G T C G T A C A C T G C T A G A G C T C G A T A C T G C T A G T A C G C G T A A C G T
C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T A C G T A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GRCMGRYWGRSAK
CACGGCAGTTGGTNN-
 A C G T A C G T A C G T A C T G C T A G A G T C G T A C A C T G C T A G A G C T C G A T A C T G C T A G T A C G C G T A A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G A C G T