Information for 4-CAGGRGGCCAGCTGGG (Motif 16)

A T G C C T G A A C T G A C T G T C A G A T C G A T C G A G T C A G T C C G T A A T C G A G T C A C G T C T A G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C T G C A A C T G A T G C G A C T A C T G A C T G A T G C A T G C A G T C A G T C G T A C A G C T A T C G
p-value:1e-8
log p-value:-1.938e+01
Information Content per bp:1.782
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets28.2 +/- 17.3bp
Average Position of motif in Background52.8 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CAGGRGGCCAGCTGGG-
--GGCCYCCTGCTGDGH
 A T G C C T G A A C T G A C T G T C A G A T C G A T C G A G T C A G T C C G T A A T C G A G T C A C G T C T A G A C T G A C T G A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PLAG1/MA0163.1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CAGGRGGCCAGCTGGG-
---GGGGCCCAAGGGGG
 A T G C C T G A A C T G A C T G T C A G A T C G A T C G A G T C A G T C C G T A A T C G A G T C A C G T C T A G A C T G A C T G A C G T
A C G T A C G T A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CAGGRGGCCAGCTGGG
-----NNVCAGCTGB-
 A T G C C T G A A C T G A C T G T C A G A T C G A T C G A G T C A G T C C G T A A T C G A G T C A C G T C T A G A C T G A C T G
A C G T A C G T A C G T A C G T A C G T C A T G T C A G T G A C G T A C G T C A T A C G T A G C G C A T T A C G A C T G A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGGRGGCCAGCTGGG
NNNGGGGCGCCCCCNN--
 A C G T A C G T A T G C C T G A A C T G A C T G T C A G A T C G A T C G A G T C A G T C C G T A A T C G A G T C A C G T C T A G A C T G A C T G
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CAGGRGGCCAGCTGGG---
----TCNCCTGCTGNGNNN
 A T G C C T G A A C T G A C T G T C A G A T C G A T C G A G T C A G T C C G T A A T C G A G T C A C G T C T A G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CAGGRGGCCAGCTGGG---
----TNTCCTGCTGTGNNG
 A T G C C T G A A C T G A C T G T C A G A T C G A T C G A G T C A G T C C G T A A T C G A G T C A C G T C T A G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CAGGRGGCCAGCTGGG
----CCCCCTGCTGTG
 A T G C C T G A A C T G A C T G T C A G A T C G A T C G A G T C A G T C C G T A A T C G A G T C A C G T C T A G A C T G A C T G
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CAGGRGGCCAGCTGGG--
-----TGCCCTNAGGGCA
 A T G C C T G A A C T G A C T G T C A G A T C G A T C G A G T C A G T C C G T A A T C G A G T C A C G T C T A G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CAGGRGGCCAGCTGGG--
-----TGCCCTGAGGGCA
 A T G C C T G A A C T G A C T G T C A G A T C G A T C G A G T C A G T C C G T A A T C G A G T C A C G T C T A G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CAGGRGGCCAGCTGGG--
-----TGCCCTNAGGGCA
 A T G C C T G A A C T G A C T G T C A G A T C G A T C G A G T C A G T C C G T A A T C G A G T C A C G T C T A G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A