Information for 3-CCTGAGCCATGGAAAC (Motif 15)

A G T C A G T C C G A T A C T G G C T A A C T G A G T C A G T C C G T A C G A T C T A G A C T G C G T A G T C A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T C G A T A G T C A G T C C G T A A C G T A C T G A C T G A G T C C A G T G T A C G C T A A C T G A C T G
p-value:1e-8
log p-value:-1.938e+01
Information Content per bp:1.909
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.8 +/- 19.8bp
Average Position of motif in Background32.7 +/- 9.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCTGAGCCATGGAAAC-
---TTGCCATGGCAACN
 A G T C A G T C C G A T A C T G G C T A A C T G A G T C A G T C C G T A C G A T C T A G A C T G C G T A G T C A C G T A A G T C A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCTGAGCCATGGAAAC-
---TTGCCATGGCAACC
 A G T C A G T C C G A T A C T G G C T A A C T G A G T C A G T C C G T A C G A T C T A G A C T G C G T A G T C A C G T A A G T C A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PB0158.1_Rfx3_2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTGAGCCATGGAAAC-------
ACTGACCCTTGGTTACCACAAAG
 A G T C A G T C C G A T A C T G G C T A A C T G A G T C A G T C C G T A C G A T C T A G A C T G C G T A G T C A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCTGAGCCATGGAAAC
CGGTTGCCATGGCAAC
 A G T C A G T C C G A T A C T G G C T A A C T G A G T C A G T C C G T A C G A T C T A G A C T G C G T A G T C A C G T A A G T C
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCTGAGCCATGGAAAC
--GTTGCCATGGCAAC
 A G T C A G T C C G A T A C T G G C T A A C T G A G T C A G T C C G T A C G A T C T A G A C T G C G T A G T C A C G T A A G T C
A C G T A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

RFX3/MA0798.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCTGAGCCATGGAAAC-
-CGTTGCCATGGCAACG
 A G T C A G T C C G A T A C T G G C T A A C T G A G T C A G T C C G T A C G A T C T A G A C T G C G T A G T C A C G T A A G T C A C G T
A C G T A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCTGAGCCATGGAAAC-
-CGTTGCCATGGCAACG
 A G T C A G T C C G A T A C T G G C T A A C T G A G T C A G T C C G T A C G A T C T A G A C T G C G T A G T C A C G T A A G T C A C G T
A C G T A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCTGAGCCATGGAAAC-
-CGTTGCCATGGCAACG
 A G T C A G T C C G A T A C T G G C T A A C T G A G T C A G T C C G T A C G A T C T A G A C T G C G T A G T C A C G T A A G T C A C G T
A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCTGAGCCATGGAAAC-
--GTTGCCATGGCAACM
 A G T C A G T C C G A T A C T G G C T A A C T G A G T C A G T C C G T A C G A T C T A G A C T G C G T A G T C A C G T A A G T C A C G T
A C G T A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX5/MA0510.2/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCTGAGCCATGGAAAC-
-CGTTGCCATGGCAACG
 A G T C A G T C C G A T A C T G G C T A A C T G A G T C A G T C C G T A C G A T C T A G A C T G C G T A G T C A C G T A A G T C A C G T
A C G T A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G