Information for 8-AGACGGCTCA (Motif 13)

C G T A A C T G C G T A A G T C A T C G A C T G A G T C A C G T A G T C G T C A
Reverse Opposite:
A C G T A C T G C G T A C T A G T G A C T A G C C T A G C G A T A G T C A C G T
p-value:1e-9
log p-value:-2.096e+01
Information Content per bp:1.850
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif55.4
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets42.5 +/- 19.2bp
Average Position of motif in Background50.9 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PROX1/MA0794.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AGACGGCTCA
CAAGACGCCTTA
 A C G T A C G T C G T A A C T G C G T A A G T C A T C G A C T G A G T C A C G T A G T C G T C A
A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGCTCA
CCAGACRSVB--
 A C G T A C G T C G T A A C T G C G T A A G T C A T C G A C T G A G T C A C G T A G T C G T C A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGACGGCTCA
CCAGACAG----
 A C G T A C G T C G T A A C T G C G T A A G T C A T C G A C T G A G T C A C G T A G T C G T C A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGACGGCTCA----
AGAGCGGGGTCAAGTA
 A C G T A C G T C G T A A C T G C G T A A G T C A T C G A C T G A G T C A C G T A G T C G T C A A C G T A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------AGACGGCTCA
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C A T C G A C T G A G T C A C G T A G T C G T C A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGACGGCTCA----
CGCGCCGGGTCACGTA
 A C G T A C G T C G T A A C T G C G T A A G T C A T C G A C T G A G T C A C G T A G T C G T C A A C G T A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

RHOXF1/MA0719.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGACGGCTCA-
---NGGATTAN
 C G T A A C T G C G T A A G T C A T C G A C T G A G T C A C G T A G T C G T C A A C G T
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGACGGCTCA
----NGCTN-
 C G T A A C T G C G T A A G T C A T C G A C T G A G T C A C G T A G T C G T C A
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

JDP2/MA0655.1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGACGGCTCA-
--ATGACTCAT
 C G T A A C T G C G T A A G T C A T C G A C T G A G T C A C G T A G T C G T C A A C G T
A C G T A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T

Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGACGGCTCA--
GGATGACTCATC
 C G T A A C T G C G T A A G T C A T C G A C T G A G T C A C G T A G T C G T C A A C G T A C G T
C A T G C T A G T C G A A C G T A C T G C G T A T A G C C G A T T G A C C G T A A G C T G A T C