Information for 2-GGAACBBTAGGTCCAG (Motif 6)

A C T G A C T G G T C A C T G A A G T C A C T G A G T C A G C T C G T A C T A G A T C G A C G T A G T C A T G C C G T A A C T G
Reverse Opposite:
A G T C A C G T A T C G A C T G C G T A A T G C A G T C A C G T C T G A T A C G T A G C A C T G A G C T A C G T G T A C G T A C
p-value:1e-10
log p-value:-2.496e+01
Information Content per bp:1.767
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.6 +/- 19.4bp
Average Position of motif in Background11.1 +/- 0.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.53
Offset:8
Orientation:forward strand
Alignment:GGAACBBTAGGTCCAG----
--------AGGTCAAGGTCA
 A C T G A C T G G T C A C T G A A G T C A C T G A G T C A G C T C G T A C T A G A T C G A C G T A G T C A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.51
Offset:8
Orientation:forward strand
Alignment:GGAACBBTAGGTCCAG----
--------AGGTCAAGGTCA
 A C T G A C T G G T C A C T G A A G T C A C T G A G T C A G C T C G T A C T A G A T C G A C G T A G T C A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:GGAACBBTAGGTCCAG----
--------GGCTCYAKCAYC
 A C T G A C T G G T C A C T G A A G T C A C T G A G T C A G C T C G T A C T A G A T C G A C G T A G T C A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:4
Score:0.49
Offset:-5
Orientation:reverse strand
Alignment:-----GGAACBBTAGGTCCAG
NNGAGGTTACTNNAGGTCA--
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T C A C T G A A G T C A C T G A G T C A G C T C G T A C T A G A T C G A C G T A G T C A T G C C G T A A C T G
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A A C G T A C G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:GGAACBBTAGGTCCAG----
-----BCNGGTTCTAGANCN
 A C T G A C T G G T C A C T G A A G T C A C T G A G T C A G C T C G T A C T A G A T C G A C G T A G T C A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T T G A C C T A G C A T G C T A G G A C T A C G T A G T C A G C T C T G A T A C G T C G A C G A T A G T C G A C T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GGAACBBTAGGTCCAG
GGGTTACTANAGGTCA--
 A C G T A C G T A C T G A C T G G T C A C T G A A G T C A C T G A G T C A G C T C G T A C T A G A T C G A C G T A G T C A T G C C G T A A C T G
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.48
Offset:3
Orientation:forward strand
Alignment:GGAACBBTAGGTCCAG---
---GGCAAAAGTCCAATAA
 A C T G A C T G G T C A C T G A A G T C A C T G A G T C A G C T C G T A C T A G A T C G A C G T A G T C A T G C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:GGAACBBTAGGTCCAG
AGNACANNNTGTNCTN
 A C T G A C T G G T C A C T G A A G T C A C T G A G T C A G C T C G T A C T A G A T C G A C G T A G T C A T G C C G T A A C T G
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.46
Offset:-1
Orientation:forward strand
Alignment:-GGAACBBTAGGTCCAG
ATTTACAGTAGCAAAA-
 A C G T A C T G A C T G G T C A C T G A A G T C A C T G A G T C A G C T C G T A C T A G A T C G A C G T A G T C A T G C C G T A A C T G
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.46
Offset:1
Orientation:reverse strand
Alignment:GGAACBBTAGGTCCAG
-GRACAGWMTGTYCTB
 A C T G A C T G G T C A C T G A A G T C A C T G A G T C A G C T C G T A C T A G A T C G A C G T A G T C A T G C C G T A A C T G
A C G T C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G