Information for 2-CTTTCATTGC (Motif 5)

T A G C G A C T A C G T A G C T G A T C C T G A A G C T A C G T C T A G A G T C
Reverse Opposite:
C T A G A G T C C G T A C T G A A G C T C T A G C T G A C G T A C T G A A T C G
p-value:1e-11
log p-value:-2.674e+01
Information Content per bp:1.799
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif107.1
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets48.3 +/- 26.6bp
Average Position of motif in Background45.4 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd9/MA0913.1/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CTTTCATTGC
TTTTTATTGC
 T A G C G A C T A C G T A G C T G A T C C T G A A G C T A C G T C T A G A G T C
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

Hmx1/MA0896.1/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---CTTTCATTGC----
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T T A G C G A C T A C G T A G C T G A T C C T G A A G C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:3
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---CTTTCATTGC----
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T T A G C G A C T A C G T A G C T G A T C C T G A A G C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:CTTTCATTGC-
NTTTTATTACN
 T A G C G A C T A C G T A G C T G A T C C T G A A G C T A C G T C T A G A G T C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:5
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CTTTCATTGC-
-TTTAATTGCN
 T A G C G A C T A C G T A G C T G A T C C T G A A G C T A C G T C T A G A G T C A C G T
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CTTTCATTGC
-TTTTATTGC
 T A G C G A C T A C G T A G C T G A T C C T G A A G C T A C G T C T A G A G T C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CTTTCATTGC--
-TTTTATGGCTN
 T A G C G A C T A C G T A G C T G A T C C T G A A G C T A C G T C T A G A G T C A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CTTTCATTGC
NTTTTATGAC
 T A G C G A C T A C G T A G C T G A T C C T G A A G C T A C G T C T A G A G T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CTTTCATTGC---
NGANTTTTATGGCTCN
 A C G T A C G T A C G T T A G C G A C T A C G T A G C T G A T C C T G A A G C T A C G T C T A G A G T C A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CTTTCATTGC----
NAATTTTATTACCNNN
 A C G T A C G T T A G C G A C T A C G T A G C T G A T C C T G A A G C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T