Information for 2-TTGGCATTCAGTC (Motif 2)

A C G T A C G T A C T G A C T G G T A C G T C A A C G T A G C T G T A C C T G A A C T G A C G T G A T C
Reverse Opposite:
C T A G C G T A A G T C A G C T A C T G C T G A T C G A A C G T A C T G G T A C G T A C T C G A C G T A
p-value:1e-14
log p-value:-3.361e+01
Information Content per bp:1.782
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets61.0 +/- 28.9bp
Average Position of motif in Background63.6 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCATTCAGTC
NNTTGGCANN-----
 A C G T A C G T A C G T A C G T A C T G A C T G G T A C G T C A A C G T A G C T G T A C C T G A A C T G A C G T G A T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCATTCAGTC
GGTTGGCAT------
 A C G T A C G T A C G T A C G T A C T G A C T G G T A C G T C A A C G T A G C T G T A C C T G A A C T G A C G T G A T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCATTCAGTC
NTTGGCANN-----
 A C G T A C G T A C G T A C T G A C T G G T A C G T C A A C G T A G C T G T A C C T G A A C T G A C G T G A T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTGGCATTCAGTC
TTGGCA-------
 A C G T A C G T A C T G A C T G G T A C G T C A A C G T A G C T G T A C C T G A A C T G A C G T G A T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCATTCAGTC
NGTGGGCAT------
 A C G T A C G T A C G T A C G T A C T G A C T G G T A C G T C A A C G T A G C T G T A C C T G A A C T G A C G T G A T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TTGGCATTCAGTC
NGTAGGTTGGCATNNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T A C G T C A A C G T A G C T G T A C C T G A A C T G A C G T G A T C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCATTCAGTC
CTTGGCAA------
 A C G T A C G T A C G T A C T G A C T G G T A C G T C A A C G T A G C T G T A C C T G A A C T G A C G T G A T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTGGCATTCAGTC-
TTGGCATGGTGCCA
 A C G T A C G T A C T G A C T G G T A C G T C A A C G T A G C T G T A C C T G A A C T G A C G T G A T C A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTGGCATTCAGTC
BTVATTWGCATA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T A C G T C A A C G T A G C T G T A C C T G A A C T G A C G T G A T C
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTGGCATTCAGTC-
CTGGCAGNCTGCCA
 A C G T A C G T A C T G A C T G G T A C G T C A A C G T A G C T G T A C C T G A A C T G A C G T G A T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A