Information for 3-AACAHCVCAATTCAGT (Motif 3)

C G T A C T G A A G T C C G T A G A T C G T A C T A G C A T G C C G T A C G T A A C G T C G A T G T A C C T G A A T C G A C G T
Reverse Opposite:
G T C A T A G C A G C T A C T G C G T A G T C A C G A T A C G T A T C G A C T G A C T G C A T G A C G T C T A G A G C T C G A T
p-value:1e-10
log p-value:-2.335e+01
Information Content per bp:1.726
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif18.18%
Number of Background Sequences with motif15.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.8 +/- 26.0bp
Average Position of motif in Background54.5 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0006.1_Barhl2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AACAHCVCAATTCAGT-
-AAAAACCAATTAAGAA
 C G T A C T G A A G T C C G T A G A T C G T A C T A G C A T G C C G T A C G T A A C G T C G A T G T A C C T G A A T C G A C G T A C G T
A C G T G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AACAHCVCAATTCAGT----
----AATCAATTCAATAATT
 C G T A C T G A A G T C C G T A G A T C G T A C T A G C A T G C C G T A C G T A A C G T C G A T G T A C C T G A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:3
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AACAHCVCAATTCAGT
------CCAATTAA--
 C G T A C T G A A G T C C G T A G A T C G T A C T A G C A T G C C G T A C G T A A C G T C G A T G T A C C T G A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T

PH0108.1_Msx3/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AACAHCVCAATTCAGT-
-CAAAACCAATTAATTT
 C G T A C T G A A G T C C G T A G A T C G T A C T A G C A T G C C G T A C G T A A C G T C G A T G T A C C T G A A T C G A C G T A C G T
A C G T T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PB0066.1_Sox17_1/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AACAHCVCAATTCAGT-
--ATAAACAATTAAACA
 C G T A C T G A A G T C C G T A G A T C G T A C T A G C A T G C C G T A C G T A A C G T C G A T G T A C C T G A A T C G A C G T A C G T
A C G T A C G T T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

Msx3/MA0709.1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:AACAHCVCAATTCAGT
------CCAATTAA--
 C G T A C T G A A G T C C G T A G A T C G T A C T A G C A T G C C G T A C G T A A C G T C G A T G T A C C T G A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AACAHCVCAATTCAGT-
TNNAGAACAATANATNN
 C G T A C T G A A G T C C G T A G A T C G T A C T A G C A T G C C G T A C G T A A C G T C G A T G T A C C T G A A T C G A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

Hmx1/MA0896.1/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AACAHCVCAATTCAGT---
--ACAAGCAATTAATGAAT
 C G T A C T G A A G T C C G T A G A T C G T A C T A G C A T G C C G T A C G T A A C G T C G A T G T A C C T G A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AACAHCVCAATTCAGT---
--ACAAGCAATTAATGAAT
 C G T A C T G A A G T C C G T A G A T C G T A C T A G C A T G C C G T A C G T A A C G T C G A T G T A C C T G A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AACAHCVCAATTCAGT---
--CGACCCAATCAACGGTG
 C G T A C T G A A G T C C G T A G A T C G T A C T A G C A T G C C G T A C G T A A C G T C G A T G T A C C T G A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G