Information for 5-TGCATTGTCG (Motif 29)

A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A G T C C G T A C G T A A C G T A C T G A G T C C G T A
p-value:1e-3
log p-value:-7.679e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.55%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets10.0 +/- 0.0bp
Average Position of motif in Background46.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TGCATTGTCG
CTCATTGTC-
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A G T C A C T G
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

ZNF143/MA0088.2/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TGCATTGTCG---
CAATGCATTGTGGGTA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A G T C A C T G A C G T A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TGCATTGTCG
--CTTTGT--
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A G T C A C T G
A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TGCATTGTCG-
-CCWTTGTYYB
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A G T C A C T G A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGCATTGTCG-
-CCATTGTTNY
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A G T C A C T G A C G T
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGCATTGTCG-
-CCATTGTTTT
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A G T C A C T G A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGCATTGTCG
-CCWTTGTY-
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A G T C A C T G
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGCATTGTCG---
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A G T C A C T G A C G T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TGCATTGTCG-
-CCATTGTTYB
 A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A G T C A C T G A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TGCATTGTCG
AGGVNCCTTTGT--
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A G T C A C T G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T