Information for 20-GTTHAAGGACADDGCA (Motif 25)

A C T G C A G T C G A T G C T A C T G A C T G A A T C G C T A G C G T A T G A C C T G A C A T G C A T G T A C G G T A C C G T A
Reverse Opposite:
C G A T A C T G A T G C G A T C G A T C A G C T A C T G C G A T A G T C A T G C A G C T A G C T C G A T C G T A G T C A A G T C
p-value:1e-5
log p-value:-1.200e+01
Information Content per bp:1.655
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif13.64%
Number of Background Sequences with motif76.2
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets44.0 +/- 30.3bp
Average Position of motif in Background54.6 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTTHAAGGACADDGCA
AGGTCAAGGTCA-----
 A C G T A C T G C A G T C G A T G C T A C T G A C T G A A T C G C T A G C G T A T G A C C T G A C A T G C A T G T A C G G T A C C G T A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T A C G T A C G T A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTTHAAGGACADDGCA
AGGTCACGGAGAGGTCA
 A C G T A C T G C A G T C G A T G C T A C T G A C T G A A T C G C T A G C G T A T G A C C T G A C A T G C A T G T A C G G T A C C G T A
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTTHAAGGACADDGCA
AGGTCAAGGTCA-----
 A C G T A C T G C A G T C G A T G C T A C T G A C T G A A T C G C T A G C G T A T G A C C T G A C A T G C A T G T A C G G T A C C G T A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTTHAAGGACADDGCA-
RGGTCADNNAGAGGTCAV
 A C G T A C T G C A G T C G A T G C T A C T G A C T G A A T C G C T A G C G T A T G A C C T G A C A T G C A T G T A C G G T A C C G T A A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTTHAAGGACADDGCA
AAGTTCAAGGTCAGC---
 A C G T A C G T A C T G C A G T C G A T G C T A C T G A C T G A A T C G C T A G C G T A T G A C C T G A C A T G C A T G T A C G G T A C C G T A
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GTTHAAGGACADDGCA
-----GGAACAAAGR-
 A C T G C A G T C G A T G C T A C T G A C T G A A T C G C T A G C G T A T G A C C T G A C A T G C A T G T A C G G T A C C G T A
A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GTTHAAGGACADDGCA
-----AAAACAATGG-
 A C T G C A G T C G A T G C T A C T G A C T G A A T C G C T A G C G T A T G A C C T G A C A T G C A T G T A C G G T A C C G T A
A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GTTHAAGGACADDGCA
--CCAGGAACAG----
 A C T G C A G T C G A T G C T A C T G A C T G A A T C G C T A G C G T A T G A C C T G A C A T G C A T G T A C G G T A C C G T A
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GTTHAAGGACADDGCA
-TTCAAGGTCAT----
 A C T G C A G T C G A T G C T A C T G A C T G A A T C G C T A G C G T A T G A C C T G A C A T G C A T G T A C G G T A C C G T A
A C G T A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GTTHAAGGACADDGCA
-----VRRACAAWGG-
 A C T G C A G T C G A T G C T A C T G A C T G A A T C G C T A G C G T A T G A C C T G A C A T G C A T G T A C G G T A C C G T A
A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T