Information for 2-HTGGTCTTBHGAAGGA (Motif 2)

G T A C A C G T A C T G A T C G A G C T A G T C A G C T A C G T A C G T G C T A C T A G T C G A C T G A A T C G C T A G G T C A
Reverse Opposite:
A C G T A G T C A T G C A G C T A G C T A G T C C G A T T C G A G T C A C T G A A C T G C T G A A T G C A G T C G T C A C A T G
p-value:1e-10
log p-value:-2.400e+01
Information Content per bp:1.683
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif135.6
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets44.5 +/- 30.1bp
Average Position of motif in Background47.8 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:HTGGTCTTBHGAAGGA
---GNCTATAAAAGG-
 G T A C A C G T A C T G A T C G A G C T A G T C A G C T A C G T A C G T G C T A C T A G T C G A C T G A A T C G C T A G G T C A
A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:2
Score:0.52
Offset:2
Orientation:forward strand
Alignment:HTGGTCTTBHGAAGGA-
--GGTCANYTGAGGWCA
 G T A C A C G T A C T G A T C G A G C T A G T C A G C T A C G T A C G T G C T A C T A G T C G A C T G A A T C G C T A G G T C A A C G T
A C G T A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---HTGGTCTTBHGAAGGA
NNATTGGACTTTNGNN---
 A C G T A C G T A C G T G T A C A C G T A C T G A T C G A G C T A G T C A G C T A C G T A C G T G C T A C T A G T C G A C T G A A T C G C T A G G T C A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-HTGGTCTTBHGAAGGA
BNTGDCCTTG-------
 A C G T G T A C A C G T A C T G A T C G A G C T A G T C A G C T A C G T A C G T G C T A C T A G T C G A C T G A A T C G C T A G G T C A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:forward strand
Alignment:HTGGTCTTBHGAAGGA--
-AGGTCATGCAAAGGTCA
 G T A C A C G T A C T G A T C G A G C T A G T C A G C T A C G T A C G T G C T A C T A G T C G A C T G A A T C G C T A G G T C A A C G T A C G T
A C G T T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:HTGGTCTTBHGAAGGA
-TGACCTTGAN-----
 G T A C A C G T A C T G A T C G A G C T A G T C A G C T A C G T A C G T G C T A C T A G T C G A C T G A A T C G C T A G G T C A
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--HTGGTCTTBHGAAGGA
NRRGGGTCTT--------
 A C G T A C G T G T A C A C G T A C T G A T C G A G C T A G T C A G C T A C G T A C G T G C T A C T A G T C G A C T G A A T C G C T A G G T C A
A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:8
Score:0.50
Offset:-6
Orientation:reverse strand
Alignment:------HTGGTCTTBHGAAGGA
NNANTGGTGGTCTTNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C A C G T A C T G A T C G A G C T A G T C A G C T A C G T A C G T G C T A C T A G T C G A C T G A A T C G C T A G G T C A
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:HTGGTCTTBHGAAGGA
-TGACCTTGAV-----
 G T A C A C G T A C T G A T C G A G C T A G T C A G C T A C G T A C G T G C T A C T A G T C G A C T G A A T C G C T A G G T C A
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:HTGGTCTTBHGAAGGA
GTGACCTT--------
 G T A C A C G T A C T G A T C G A G C T A G T C A G C T A C G T A C G T G C T A C T A G T C G A C T G A A T C G C T A G G T C A
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T