Information for 2-MCCATCAYAM (Motif 12)

G T C A G T A C G T A C C G T A A C G T A G T C G T C A A G C T G T C A G T C A
Reverse Opposite:
A C G T A C G T C T G A A C G T C T A G G T C A A C G T A C T G A C T G A C G T
p-value:1e-7
log p-value:-1.614e+01
Information Content per bp:1.814
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif22.73%
Number of Background Sequences with motif250.4
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets42.0 +/- 23.3bp
Average Position of motif in Background48.1 +/- 36.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GCM2/MA0767.1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-MCCATCAYAM
TACCCGCATN-
 A C G T G T C A G T A C G T A C C G T A A C G T A G T C G T C A A G C T G T C A G T C A
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---MCCATCAYAM----
TCACCCATCAATAAACA
 A C G T A C G T A C G T G T C A G T A C G T A C C G T A A C G T A G T C G T C A A G C T G T C A G T C A A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

GCM1/MA0646.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--MCCATCAYAM
GTACCCGCATN-
 A C G T A C G T G T C A G T A C G T A C C G T A A C G T A G T C G T C A A G C T G T C A G T C A
T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:MCCATCAYAM
CCAATCAA--
 G T C A G T A C G T A C C G T A A C G T A G T C G T C A A G C T G T C A G T C A
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

ZNF410/MA0752.1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----MCCATCAYAM--
TCCATCCCATAATACTC
 A C G T A C G T A C G T A C G T A C G T G T C A G T A C G T A C C G T A A C G T A G T C G T C A A G C T G T C A G T C A A C G T A C G T
A C G T T G A C G A T C G C T A C A G T G T A C G T A C A T G C G T C A A G C T G T C A T C G A G A C T C T G A G T A C A G C T G T A C

PB0024.1_Gcm1_1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----MCCATCAYAM--
TCGTACCCGCATCATT
 A C G T A C G T A C G T A C G T G T C A G T A C G T A C C G T A A C G T A G T C G T C A A G C T G T C A G T C A A C G T A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----MCCATCAYAM-
ATTTCCCAGVAKSCY
 A C G T A C G T A C G T A C G T G T C A G T A C G T A C C G T A A C G T A G T C G T C A A G C T G T C A G T C A A C G T
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---MCCATCAYAM----
AACACCAAAACAAAGGA
 A C G T A C G T A C G T G T C A G T A C G T A C C G T A A C G T A G T C G T C A A G C T G T C A G T C A A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:MCCATCAYAM------
CGAAGCACACAAAATA
 G T C A G T A C G T A C C G T A A C G T A G T C G T C A A G C T G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----MCCATCAYAM
GYCATCMATCAT--
 A C G T A C G T A C G T A C G T G T C A G T A C G T A C C G T A A C G T A G T C G T C A A G C T G T C A G T C A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T