Information for 6-CAGAAGGAGG (Motif 9)

A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A G T C A G T C A C G T A C G T A G T C A C G T A C T G
p-value:1e-3
log p-value:-8.265e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif24.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets68.0 +/- 0.0bp
Average Position of motif in Background41.0 +/- 39.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CAGAAGGAGG
CACAGCAGGGGG
 A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A C T G A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CAGAAGGAGG--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CAGAAGGAGG----
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CAGAAGGAGG
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A C T G A C T G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAGAAGGAGG--------
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAGAAGGAGG
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A C T G A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGAAGGAGG-
-ANCAGGAAGT
 A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T
A C G T C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CAGAAGGAGG-----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGAAGGAGG
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A C T G A C T G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAGAAGGAGG--
NCGCAGCGGGGGGTC
 A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C