Information for 2-AGTTGGGACACAA (Motif 3)

C G T A A C T G A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C G T A C T G A C G T A G T C A G T C A G T C C G T A C G T A A G T C A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets21.0 +/- 0.0bp
Average Position of motif in Background84.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGTTGGGACACAA----
-CGAAGCACACAAAATA
 C G T A A C T G A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGTTGGGACACAA------
----CTCACACAATGGCGC
 C G T A A C T G A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGTTGGGACACAA
GGTTGGCAT----
 C G T A A C T G A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A G T C C G T A C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGTTGGGACACAA
NNTTGGCANN---
 C G T A A C T G A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A G T C C G T A C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGTTGGGACACAA---
-ATTTGCATACAATGG
 C G T A A C T G A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGTTGGGACACAA
---TGGGGCCCAC
 C G T A A C T G A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A G T C C G T A C G T A
A C G T A C G T A C G T G A C T C T A G A C T G A C T G T A C G A G T C A G T C A G T C C T G A A T G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGTTGGGACACAA
-CCAGGAACAG--
 C G T A A C T G A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A G T C C G T A C G T A
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGTTGGGACACAA
AGGTGNCAGACAG
 C G T A A C T G A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A G T C C G T A C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGTTGGGACACAA
AAYTAGGTCA---
 C G T A A C T G A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A G T C C G T A C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------AGTTGGGACACAA
CACGGCAGTTGGTNN----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C T G A C T G A C T G C G T A A G T C C G T A A G T C C G T A C G T A
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G A C G T A C G T A C G T A C G T