Information for 1-AATTTAAGGCAGC (Motif 2)

C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A C G T A C G T A A C G T A C G T
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets8.0 +/- 0.0bp
Average Position of motif in Background78.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0162.1_Sfpi1_2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AATTTAAGGCAGC
CAAATTCCGGAACC
 A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G A G T C
G T A C G C T A C T G A G C T A G C A T C G A T G T A C T G A C T C A G T C A G C G T A G C T A G T A C G T A C

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AATTTAAGGCAGC
NTGATTTATGGCC--
 A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G A G T C
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AATTTAAGGCAGC
TGATTTATGGCC--
 A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G A G T C
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AATTTAAGGCAGC
AATTAGTG-----
 C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G A G T C
T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AATTTAAGGCAGC
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G A G T C
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AATTTAAGGCAGC
DGWTTTATGRCN--
 A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G A G T C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AATTTAAGGCAGC-
----TGAGTCAGCA
 C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AATTTAAGGCAGC
TGATTTATGGCC--
 A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G A G T C
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AATTTAAGGCAGC
TGATTTATGGC---
 A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G A G T C
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T A C G T

PB0184.1_Tbp_2/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AATTTAAGGCAGC
CCGATTTAAGCGACC
 A C G T A C G T C G T A C G T A A C G T A C G T A C G T C G T A C G T A A C T G A C T G A G T C C G T A A C T G A G T C
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C