Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 414)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 29304)	% of Background Sequences with Motif
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-6.858e+00	0.3824	23.0	5.56%	791.2	2.70%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-5.251e+00	0.9540	41.0	9.90%	1908.9	6.50%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-2	-4.829e+00	0.9700	6.0	1.45%	121.3	0.41%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-2	-4.759e+00	0.9700	7.0	1.69%	161.9	0.55%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-4.754e+00	0.9700	4.0	0.97%	56.7	0.19%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-4.452e+00	0.9700	22.0	5.31%	914.5	3.12%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-3.998e+00	0.9700	24.0	5.80%	1068.6	3.64%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-3.954e+00	0.9700	14.0	3.38%	527.1	1.80%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.834e+00	0.9700	4.0	0.97%	74.2	0.25%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.772e+00	0.9700	28.0	6.76%	1323.4	4.51%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.763e+00	0.9700	25.0	6.04%	1150.1	3.92%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-1	-3.693e+00	0.9700	15.0	3.62%	599.5	2.04%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-3.652e+00	0.9700	22.0	5.31%	990.6	3.37%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.497e+00	0.9700	6.0	1.45%	164.1	0.56%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.164e+00	1.0000	27.0	6.52%	1340.6	4.57%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.130e+00	1.0000	36.0	8.70%	1893.0	6.45%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-3.124e+00	1.0000	4.0	0.97%	93.0	0.32%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-3.024e+00	1.0000	19.0	4.59%	885.6	3.02%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.019e+00	1.0000	36.0	8.70%	1911.4	6.51%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-3.014e+00	1.0000	11.0	2.66%	438.5	1.49%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.962e+00	1.0000	19.0	4.59%	892.7	3.04%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-1	-2.875e+00	1.0000	2.0	0.48%	27.9	0.10%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-2.857e+00	1.0000	19.0	4.59%	904.3	3.08%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.855e+00	1.0000	8.0	1.93%	292.8	1.00%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.832e+00	1.0000	21.0	5.07%	1025.4	3.49%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.766e+00	1.0000	31.0	7.49%	1642.7	5.60%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-2.714e+00	1.0000	21.0	5.07%	1041.0	3.55%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-2.698e+00	1.0000	22.0	5.31%	1102.4	3.76%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-2.692e+00	1.0000	2.0	0.48%	30.4	0.10%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-2.640e+00	1.0000	19.0	4.59%	930.7	3.17%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.633e+00	1.0000	15.0	3.62%	696.6	2.37%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.621e+00	1.0000	3.0	0.72%	68.6	0.23%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-2.611e+00	1.0000	11.0	2.66%	471.0	1.60%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-2.610e+00	1.0000	37.0	8.94%	2045.8	6.97%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-2.532e+00	1.0000	18.0	4.35%	884.7	3.01%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-1	-2.482e+00	1.0000	6.0	1.45%	213.1	0.73%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-2.477e+00	1.0000	40.0	9.66%	2263.0	7.71%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-2.465e+00	1.0000	6.0	1.45%	214.1	0.73%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.449e+00	1.0000	29.0	7.00%	1570.8	5.35%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-2.342e+00	1.0000	21.0	5.07%	1091.5	3.72%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.338e+00	1.0000	3.0	0.72%	77.2	0.26%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.329e+00	1.0000	16.0	3.86%	790.0	2.69%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.271e+00	1.0000	31.0	7.49%	1728.9	5.89%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.253e+00	1.0000	8.0	1.93%	335.4	1.14%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.225e+00	1.0000	15.0	3.62%	743.5	2.53%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.210e+00	1.0000	20.0	4.83%	1049.7	3.58%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.210e+00	1.0000	6.0	1.45%	230.2	0.78%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.160e+00	1.0000	5.0	1.21%	181.1	0.62%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.149e+00	1.0000	98.0	23.67%	6208.2	21.15%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.125e+00	1.0000	65.0	15.70%	3988.5	13.59%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.066e+00	1.0000	31.0	7.49%	1768.3	6.02%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.038e+00	1.0000	6.0	1.45%	242.8	0.83%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.022e+00	1.0000	9.0	2.17%	413.0	1.41%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.991e+00	1.0000	13.0	3.14%	652.6	2.22%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.945e+00	1.0000	4.0	0.97%	142.7	0.49%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.943e+00	1.0000	34.0	8.21%	1988.6	6.77%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.928e+00	1.0000	4.0	0.97%	143.8	0.49%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.927e+00	1.0000	97.0	23.43%	6219.5	21.19%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.920e+00	1.0000	10.0	2.42%	481.6	1.64%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.913e+00	1.0000	21.0	5.07%	1159.9	3.95%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.899e+00	1.0000	37.0	8.94%	2194.5	7.48%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.890e+00	1.0000	8.0	1.93%	367.2	1.25%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.866e+00	1.0000	49.0	11.84%	2995.6	10.21%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.860e+00	1.0000	1.0	0.24%	12.9	0.04%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.850e+00	1.0000	5.0	1.21%	201.8	0.69%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.818e+00	1.0000	8.0	1.93%	374.8	1.28%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.808e+00	1.0000	16.0	3.86%	862.9	2.94%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.798e+00	1.0000	109.0	26.33%	7093.6	24.17%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.795e+00	1.0000	16.0	3.86%	865.0	2.95%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.732e+00	1.0000	7.0	1.69%	324.9	1.11%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.729e+00	1.0000	10.0	2.42%	503.1	1.71%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.729e+00	1.0000	25.0	6.04%	1450.1	4.94%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.719e+00	1.0000	1.0	0.24%	14.7	0.05%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.670e+00	1.0000	16.0	3.86%	884.5	3.01%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.663e+00	1.0000	29.0	7.00%	1725.1	5.88%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.652e+00	1.0000	16.0	3.86%	887.2	3.02%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.644e+00	1.0000	15.0	3.62%	825.1	2.81%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.625e+00	1.0000	67.0	16.18%	4283.2	14.59%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.623e+00	1.0000	9.0	2.17%	455.7	1.55%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.614e+00	1.0000	43.0	10.39%	2666.8	9.09%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.571e+00	1.0000	32.0	7.73%	1946.0	6.63%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.504e+00	1.0000	3.0	0.72%	115.7	0.39%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.493e+00	1.0000	33.0	7.97%	2032.4	6.92%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.492e+00	1.0000	42.0	10.14%	2635.2	8.98%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.487e+00	1.0000	9.0	2.17%	472.2	1.61%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.487e+00	1.0000	6.0	1.45%	289.8	0.99%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.473e+00	1.0000	8.0	1.93%	412.9	1.41%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.460e+00	1.0000	13.0	3.14%	728.1	2.48%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.453e+00	1.0000	39.0	9.42%	2445.9	8.33%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.418e+00	1.0000	5.0	1.21%	236.8	0.81%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.410e+00	1.0000	7.0	1.69%	358.6	1.22%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.390e+00	1.0000	6.0	1.45%	299.2	1.02%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.384e+00	1.0000	7.0	1.69%	361.5	1.23%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.361e+00	1.0000	1.0	0.24%	21.3	0.07%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.331e+00	1.0000	17.0	4.11%	1011.3	3.45%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.318e+00	1.0000	6.0	1.45%	307.3	1.05%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.300e+00	1.0000	29.0	7.00%	1817.6	6.19%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.296e+00	1.0000	45.0	10.87%	2902.8	9.89%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.274e+00	1.0000	6.0	1.45%	312.3	1.06%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.271e+00	1.0000	7.0	1.69%	375.9	1.28%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.254e+00	1.0000	19.0	4.59%	1160.8	3.95%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.254e+00	1.0000	45.0	10.87%	2917.3	9.94%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.247e+00	1.0000	1.0	0.24%	24.4	0.08%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.243e+00	1.0000	21.0	5.07%	1296.9	4.42%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.236e+00	1.0000	4.0	0.97%	193.3	0.66%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.229e+00	1.0000	5.0	1.21%	255.1	0.87%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.226e+00	1.0000	21.0	5.07%	1300.2	4.43%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.183e+00	1.0000	35.0	8.45%	2259.8	7.70%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.163e+00	1.0000	14.0	3.38%	848.5	2.89%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.162e+00	1.0000	17.0	4.11%	1049.0	3.57%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.149e+00	1.0000	1.0	0.24%	27.7	0.09%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.120e+00	1.0000	1.0	0.24%	28.2	0.10%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.115e+00	1.0000	15.0	3.62%	925.1	3.15%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.110e+00	1.0000	12.0	2.90%	726.2	2.47%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.094e+00	1.0000	17.0	4.11%	1064.3	3.63%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.088e+00	1.0000	15.0	3.62%	932.0	3.17%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.076e+00	1.0000	4.0	0.97%	209.9	0.72%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.072e+00	1.0000	2.0	0.48%	86.1	0.29%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.057e+00	1.0000	9.0	2.17%	537.6	1.83%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.041e+00	1.0000	37.0	8.94%	2446.2	8.33%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.015e+00	1.0000	2.0	0.48%	90.5	0.31%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.007e+00	1.0000	7.0	1.69%	413.6	1.41%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.001e+00	1.0000	7.0	1.69%	414.2	1.41%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-9.612e-01	1.0000	48.0	11.59%	3241.1	11.04%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-9.238e-01	1.0000	12.0	2.90%	766.1	2.61%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-9.173e-01	1.0000	7.0	1.69%	428.3	1.46%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.159e-01	1.0000	3.0	0.72%	162.0	0.55%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-9.107e-01	1.0000	2.0	0.48%	98.1	0.33%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-9.107e-01	1.0000	2.0	0.48%	98.7	0.34%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-8.825e-01	1.0000	4.0	0.97%	232.6	0.79%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-8.792e-01	1.0000	1.0	0.24%	38.6	0.13%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.651e-01	1.0000	46.0	11.11%	3146.7	10.72%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.614e-01	1.0000	3.0	0.72%	168.8	0.58%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-8.601e-01	1.0000	4.0	0.97%	235.1	0.80%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-8.521e-01	1.0000	2.0	0.48%	103.4	0.35%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-8.475e-01	1.0000	80.0	19.32%	5542.9	18.88%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.310e-01	1.0000	4.0	0.97%	239.3	0.82%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.246e-01	1.0000	5.0	1.21%	308.5	1.05%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-8.144e-01	1.0000	16.0	3.86%	1071.5	3.65%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-7.974e-01	1.0000	13.0	3.14%	867.2	2.95%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-7.926e-01	1.0000	9.0	2.17%	590.6	2.01%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-7.913e-01	1.0000	12.0	2.90%	799.9	2.73%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.893e-01	1.0000	4.0	0.97%	245.3	0.84%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-7.886e-01	1.0000	15.0	3.62%	1009.7	3.44%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.729e-01	1.0000	46.0	11.11%	3192.1	10.87%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-7.580e-01	1.0000	11.0	2.66%	738.7	2.52%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-7.513e-01	1.0000	6.0	1.45%	390.5	1.33%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.479e-01	1.0000	17.0	4.11%	1162.5	3.96%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.478e-01	1.0000	2.0	0.48%	113.7	0.39%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.397e-01	1.0000	3.0	0.72%	183.9	0.63%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-7.370e-01	1.0000	4.0	0.97%	253.0	0.86%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.354e-01	1.0000	29.0	7.00%	2012.2	6.85%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-7.312e-01	1.0000	31.0	7.49%	2155.4	7.34%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.195e-01	1.0000	5.0	1.21%	326.5	1.11%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-7.137e-01	1.0000	11.0	2.66%	750.4	2.56%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-7.121e-01	1.0000	4.0	0.97%	257.1	0.88%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.962e-01	1.0000	3.0	0.72%	189.5	0.65%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-6.923e-01	1.0000	2.0	0.48%	119.8	0.41%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.903e-01	1.0000	8.0	1.93%	544.8	1.86%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-6.886e-01	1.0000	12.0	2.90%	828.5	2.82%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.857e-01	1.0000	32.0	7.73%	2247.4	7.66%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.719e-01	1.0000	5.0	1.21%	335.3	1.14%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.661e-01	1.0000	8.0	1.93%	550.4	1.88%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.620e-01	1.0000	3.0	0.72%	194.0	0.66%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-6.536e-01	1.0000	10.0	2.42%	696.1	2.37%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.409e-01	1.0000	23.0	5.56%	1628.4	5.55%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.277e-01	1.0000	6.0	1.45%	416.9	1.42%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.269e-01	1.0000	9.0	2.17%	632.2	2.15%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-6.084e-01	1.0000	5.0	1.21%	348.2	1.19%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.048e-01	1.0000	3.0	0.72%	203.6	0.69%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.022e-01	1.0000	2.0	0.48%	131.0	0.45%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.922e-01	1.0000	9.0	2.17%	642.9	2.19%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.896e-01	1.0000	6.0	1.45%	425.3	1.45%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-5.712e-01	1.0000	37.0	8.94%	2665.8	9.08%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-5.705e-01	1.0000	1.0	0.24%	59.5	0.20%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.628e-01	1.0000	33.0	7.97%	2383.1	8.12%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-5.556e-01	1.0000	20.0	4.83%	1451.9	4.95%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-5.493e-01	1.0000	1.0	0.24%	61.6	0.21%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.493e-01	1.0000	27.0	6.52%	1959.3	6.67%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-5.419e-01	1.0000	35.0	8.45%	2539.0	8.65%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.310e-01	1.0000	3.0	0.72%	216.7	0.74%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-5.303e-01	1.0000	46.0	11.11%	3337.3	11.37%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-5.041e-01	1.0000	8.0	1.93%	596.2	2.03%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-4.914e-01	1.0000	12.0	2.90%	896.7	3.05%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-4.854e-01	1.0000	3.0	0.72%	225.1	0.77%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.827e-01	1.0000	17.0	4.11%	1267.7	4.32%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-4.701e-01	1.0000	20.0	4.83%	1493.8	5.09%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.692e-01	1.0000	13.0	3.14%	979.1	3.34%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.566e-01	1.0000	8.0	1.93%	612.1	2.09%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-4.511e-01	1.0000	42.0	10.14%	3107.0	10.58%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.510e-01	1.0000	4.0	0.97%	310.6	1.06%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.491e-01	1.0000	1.0	0.24%	72.6	0.25%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-4.489e-01	1.0000	73.0	17.63%	5344.2	18.21%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.481e-01	1.0000	3.0	0.72%	233.7	0.80%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-4.277e-01	1.0000	9.0	2.17%	698.9	2.38%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.256e-01	1.0000	12.0	2.90%	924.0	3.15%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.167e-01	1.0000	15.0	3.62%	1152.0	3.92%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.163e-01	1.0000	10.0	2.42%	778.1	2.65%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-4.105e-01	1.0000	8.0	1.93%	629.2	2.14%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-4.004e-01	1.0000	5.0	1.21%	402.5	1.37%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-3.953e-01	1.0000	8.0	1.93%	635.5	2.16%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-3.737e-01	1.0000	11.0	2.66%	873.8	2.98%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-3.727e-01	1.0000	2.0	0.48%	169.1	0.58%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.725e-01	1.0000	13.0	3.14%	1025.8	3.49%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.713e-01	1.0000	32.0	7.73%	2438.0	8.31%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-3.693e-01	1.0000	21.0	5.07%	1626.5	5.54%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.682e-01	1.0000	2.0	0.48%	170.2	0.58%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-3.595e-01	1.0000	9.0	2.17%	727.9	2.48%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-3.570e-01	1.0000	14.0	3.38%	1109.7	3.78%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.445e-01	1.0000	9.0	2.17%	734.7	2.50%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.384e-01	1.0000	2.0	0.48%	177.1	0.60%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.291e-01	1.0000	1.0	0.24%	90.9	0.31%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.236e-01	1.0000	29.0	7.00%	2255.3	7.68%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.235e-01	1.0000	18.0	4.35%	1432.1	4.88%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.161e-01	1.0000	6.0	1.45%	512.8	1.75%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.148e-01	1.0000	2.0	0.48%	183.7	0.63%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.139e-01	1.0000	8.0	1.93%	671.8	2.29%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.124e-01	1.0000	9.0	2.17%	750.2	2.56%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.119e-01	1.0000	8.0	1.93%	672.9	2.29%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.922e-01	1.0000	8.0	1.93%	682.3	2.32%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.836e-01	1.0000	1.0	0.24%	99.9	0.34%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.836e-01	1.0000	1.0	0.24%	99.2	0.34%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.790e-01	1.0000	1.0	0.24%	100.3	0.34%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.760e-01	1.0000	4.0	0.97%	366.3	1.25%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.701e-01	1.0000	7.0	1.69%	614.1	2.09%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.645e-01	1.0000	6.0	1.45%	536.6	1.83%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.624e-01	1.0000	16.0	3.86%	1324.9	4.51%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.503e-01	1.0000	4.0	0.97%	378.0	1.29%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.451e-01	1.0000	1.0	0.24%	108.2	0.37%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.367e-01	1.0000	25.0	6.04%	2035.7	6.93%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.363e-01	1.0000	6.0	1.45%	551.5	1.88%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.201e-01	1.0000	7.0	1.69%	643.3	2.19%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.199e-01	1.0000	2.0	0.48%	213.9	0.73%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.185e-01	1.0000	7.0	1.69%	644.6	2.20%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-2.152e-01	1.0000	8.0	1.93%	728.4	2.48%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.143e-01	1.0000	12.0	2.90%	1050.6	3.58%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.109e-01	1.0000	10.0	2.42%	893.1	3.04%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.091e-01	1.0000	1.0	0.24%	118.5	0.40%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.091e-01	1.0000	1.0	0.24%	118.2	0.40%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.091e-01	1.0000	3.0	0.72%	309.4	1.05%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-2.073e-01	1.0000	4.0	0.97%	398.4	1.36%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.049e-01	1.0000	7.0	1.69%	654.0	2.23%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.038e-01	1.0000	5.0	1.21%	486.3	1.66%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.014e-01	1.0000	6.0	1.45%	572.7	1.95%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.000e-01	1.0000	12.0	2.90%	1062.4	3.62%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.965e-01	1.0000	11.0	2.66%	985.1	3.36%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.957e-01	1.0000	39.0	9.42%	3143.6	10.71%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.928e-01	1.0000	3.0	0.72%	317.9	1.08%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.903e-01	1.0000	1.0	0.24%	124.8	0.43%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.894e-01	1.0000	6.0	1.45%	580.8	1.98%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.883e-01	1.0000	48.0	11.59%	3829.7	13.05%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.876e-01	1.0000	5.0	1.21%	496.3	1.69%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.857e-01	1.0000	55.0	13.29%	4355.6	14.84%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.818e-01	1.0000	50.0	12.08%	3989.7	13.59%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.816e-01	1.0000	16.0	3.86%	1397.8	4.76%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.796e-01	1.0000	9.0	2.17%	837.4	2.85%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.789e-01	1.0000	1.0	0.24%	128.2	0.44%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.775e-01	1.0000	2.0	0.48%	232.0	0.79%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.771e-01	1.0000	12.0	2.90%	1083.1	3.69%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.766e-01	1.0000	24.0	5.80%	2027.8	6.91%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.704e-01	1.0000	37.0	8.94%	3030.7	10.32%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.703e-01	1.0000	49.0	11.84%	3934.5	13.40%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.681e-01	1.0000	1.0	0.24%	133.0	0.45%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.668e-01	1.0000	4.0	0.97%	422.4	1.44%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.633e-01	1.0000	2.0	0.48%	238.7	0.81%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.614e-01	1.0000	2.0	0.48%	239.5	0.82%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.565e-01	1.0000	7.0	1.69%	690.7	2.35%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.542e-01	1.0000	7.0	1.69%	692.4	2.36%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.506e-01	1.0000	30.0	7.25%	2527.6	8.61%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.503e-01	1.0000	11.0	2.66%	1029.6	3.51%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.466e-01	1.0000	11.0	2.66%	1033.3	3.52%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.464e-01	1.0000	1.0	0.24%	141.2	0.48%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.461e-01	1.0000	35.0	8.45%	2918.1	9.94%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.442e-01	1.0000	1.0	0.24%	142.9	0.49%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.420e-01	1.0000	1.0	0.24%	143.6	0.49%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.420e-01	1.0000	1.0	0.24%	143.0	0.49%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.239e-01	1.0000	1.0	0.24%	152.3	0.52%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.160e-01	1.0000	25.0	6.04%	2198.7	7.49%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.115e-01	1.0000	17.0	4.11%	1569.6	5.35%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.082e-01	1.0000	5.0	1.21%	561.6	1.91%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.003e-01	1.0000	15.0	3.62%	1425.6	4.86%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-9.914e-02	1.0000	16.0	3.86%	1509.5	5.14%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-9.787e-02	1.0000	2.0	0.48%	281.3	0.96%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-9.014e-02	1.0000	9.0	2.17%	938.3	3.20%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-8.510e-02	1.0000	26.0	6.28%	2343.9	7.98%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.691e-02	1.0000	1.0	0.24%	184.4	0.63%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-7.578e-02	1.0000	1.0	0.24%	185.8	0.63%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.523e-02	1.0000	2.0	0.48%	303.5	1.03%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-7.322e-02	1.0000	27.0	6.52%	2454.5	8.36%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-7.170e-02	1.0000	28.0	6.76%	2538.4	8.65%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.592e-02	1.0000	2.0	0.48%	314.7	1.07%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.331e-02	1.0000	8.0	1.93%	898.6	3.06%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-5.902e-02	1.0000	6.0	1.45%	724.5	2.47%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-5.823e-02	1.0000	5.0	1.21%	631.8	2.15%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.651e-02	1.0000	1.0	0.24%	205.4	0.70%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-5.547e-02	1.0000	34.0	8.21%	3069.6	10.46%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.428e-02	1.0000	8.0	1.93%	918.6	3.13%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-5.426e-02	1.0000	14.0	3.38%	1443.7	4.92%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-5.290e-02	1.0000	51.0	12.32%	4406.6	15.01%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-4.476e-02	1.0000	1.0	0.24%	221.1	0.75%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-4.311e-02	1.0000	25.0	6.04%	2398.9	8.17%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-3.951e-02	1.0000	9.0	2.17%	1050.1	3.58%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-3.770e-02	1.0000	36.0	8.70%	3311.2	11.28%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-3.669e-02	1.0000	6.0	1.45%	779.7	2.66%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.605e-02	1.0000	6.0	1.45%	781.9	2.66%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.472e-02	1.0000	2.0	0.48%	367.9	1.25%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-3.367e-02	1.0000	3.0	0.72%	483.8	1.65%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.336e-02	1.0000	4.0	0.97%	590.2	2.01%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.051e-02	1.0000	1.0	0.24%	275.4	0.94%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.029e-02	1.0000	19.0	4.59%	2027.6	6.91%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.858e-02	1.0000	2.0	0.48%	418.4	1.43%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.777e-02	1.0000	1.0	0.24%	285.4	0.97%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.675e-02	1.0000	24.0	5.80%	2484.9	8.47%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.561e-02	1.0000	1.0	0.24%	294.2	1.00%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.274e-02	1.0000	18.0	4.35%	2012.0	6.85%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.007e-02	1.0000	19.0	4.59%	2135.4	7.27%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-9.849e-03	1.0000	12.0	2.90%	1507.0	5.13%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-9.410e-03	1.0000	17.0	4.11%	1968.9	6.71%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-7.622e-03	1.0000	1.0	0.24%	344.6	1.17%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.511e-03	1.0000	1.0	0.24%	355.2	1.21%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-4.387e-03	1.0000	70.0	16.91%	6452.9	21.98%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-4.177e-03	1.0000	1.0	0.24%	386.8	1.32%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.745e-03	1.0000	2.0	0.48%	570.2	1.94%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.880e-04	1.0000	1.0	0.24%	494.4	1.68%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	27.8	0.09%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	0.000e+00	1.0000	0.0	0.00%	89.7	0.31%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	0.000e+00	1.0000	0.0	0.00%	62.5	0.21%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	168.3	0.57%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	11.4	0.04%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	55.1	0.19%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	37.4	0.13%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	49.2	0.17%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	0.000e+00	1.0000	0.0	0.00%	50.4	0.17%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	141.4	0.48%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	110.0	0.37%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	58.6	0.20%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	58.9	0.20%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	52.1	0.18%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	0.000e+00	1.0000	0.0	0.00%	139.2	0.47%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	36.8	0.13%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	0.000e+00	1.0000	0.0	0.00%	107.5	0.37%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	297.6	1.01%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	5.4	0.02%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	5.5	0.02%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	57.8	0.20%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	74.0	0.25%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	17.3	0.06%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	74.0	0.25%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	39.2	0.13%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	0.000e+00	1.0000	0.0	0.00%	148.6	0.51%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	15.6	0.05%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	46.9	0.16%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	68.5	0.23%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	7.4	0.03%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	0.000e+00	1.0000	0.0	0.00%	121.4	0.41%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	0.000e+00	1.0000	0.0	0.00%	110.6	0.38%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	80.8	0.28%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	8.6	0.03%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	0.000e+00	1.0000	0.0	0.00%	56.9	0.19%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.00%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	51.9	0.18%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	8.2	0.03%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	20.5	0.07%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	5.0	0.02%