Information for 11-GACCTGWCTAGTT (Motif 20)

A C T G C G T A G T A C G T A C G A C T C T A G C G A T A G T C A C G T C G T A C T A G A C G T A C G T
Reverse Opposite:
G T C A C G T A A G T C A C G T T C G A A C T G C G T A G A T C C G T A A C T G A C T G G A C T A G T C
p-value:1e-6
log p-value:-1.474e+01
Information Content per bp:1.754
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif19.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets33.0 +/- 22.8bp
Average Position of motif in Background47.0 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GACCTGWCTAGTT------
--GAAAACTAGTTAACATC
 A C T G C G T A G T A C G T A C G A C T C T A G C G A T A G T C A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

LBX1/MA0618.1/Jaspar

Match Rank:2
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:GACCTGWCTAGTT--
-------CTAATTAA
 A C T G C G T A G T A C G T A C G A C T C T A G C G A T A G T C A C G T C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GACCTGWCTAGTT--
ACCGTGACTAATTNN
 A C T G C G T A G T A C G T A C G A C T C T A G C G A T A G T C A C G T C G T A C T A G A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GACCTGWCTAGTT---
------ACTAGTTAAC
 A C T G C G T A G T A C G T A C G A C T C T A G C G A T A G T C A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0107.1_Msx2/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GACCTGWCTAGTT------
--GAAGACCAATTAGCGCT
 A C T G C G T A G T A C G T A C G A C T C T A G C G A T A G T C A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GACCTGWCTAGTT---
NNTNNTGTCTGGNNTNG
 A C G T A C T G C G T A G T A C G T A C G A C T C T A G C G A T A G T C A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

VSX2/MA0726.1/Jaspar

Match Rank:7
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GACCTGWCTAGTT--
-------CTAATTAG
 A C T G C G T A G T A C G T A C G A C T C T A G C G A T A G T C A C G T C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

PH0034.1_Gbx2/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GACCTGWCTAGTT------
--AANCGCTAATTAGCNNN
 A C T G C G T A G T A C G T A C G A C T C T A G C G A T A G T C A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A T G C A G A C T A T G C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C A C T G A T G C G C A T

PH0168.1_Hnf1b/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GACCTGWCTAGTT-------
---ANNNCTAGTTAACNGNN
 A C T G C G T A G T A C G T A C G A C T C T A G C G A T A G T C A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

PAX4/MA0068.2/Jaspar

Match Rank:10
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GACCTGWCTAGTT--
-------CTAATTAG
 A C T G C G T A G T A C G T A C G A C T C T A G C G A T A G T C A C G T C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G