Information for 2-GGATCCTAATCACCTT (Motif 2)

A C T G A C T G C G T A A C G T A G T C A G T C G A C T C G T A C G T A A C G T A G T C T C G A G T A C G T A C G A C T A C G T
Reverse Opposite:
C G T A C G T A A C T G A C T G A C G T T A C G G T C A A C G T G C A T C G T A A C T G T A C G G T C A A C G T T A G C G T A C
p-value:1e-9
log p-value:-2.096e+01
Information Content per bp:1.664
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif11.63%
Number of Background Sequences with motif47.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets53.5 +/- 29.2bp
Average Position of motif in Background53.7 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:1
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:GGATCCTAATCACCTT--
------TAATTNVATTAN
 A C T G A C T G C G T A A C G T A G T C A G T C G A C T C G T A C G T A A C G T A G T C T C G A G T A C G T A C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GGATCCTAATCACCTT
-----CTAATCCTCTT
 A C T G A C T G C G T A A C G T A G T C A G T C G A C T C G T A C G T A A C G T A G T C T C G A G T A C G T A C G A C T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GGATCCTAATCACCTT
-TATGCWAATBAV---
 A C T G A C T G C G T A A C G T A G T C A G T C G A C T C G T A C G T A A C G T A G T C T C G A G T A C G T A C G A C T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGATCCTAATCACCTT
NNAGATNVNWATCTN---
 A C G T A C G T A C T G A C T G C G T A A C G T A G T C A G T C G A C T C G T A C G T A A C G T A G T C T C G A G T A C G T A C G A C T A C G T
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGATCCTAATCACCTT
-WATGCAAATGAG---
 A C T G A C T G C G T A A C G T A G T C A G T C G A C T C G T A C G T A A C G T A G T C T C G A G T A C G T A C G A C T A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GGATCCTAATCACCTT-
-----YTAATYNRATTA
 A C T G A C T G C G T A A C G T A G T C A G T C G A C T C G T A C G T A A C G T A G T C T C G A G T A C G T A C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGATCCTAATCACCTT--
-NTAGTTAATCCCCTTAN
 A C T G A C T G C G T A A C G T A G T C A G T C G A C T C G T A C G T A A C G T A G T C T C G A G T A C G T A C G A C T A C G T A C G T A C G T
A C G T C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

PHOX2A/MA0713.1/Jaspar

Match Rank:8
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GGATCCTAATCACCTT-
------TAATTAAATTA
 A C T G A C T G C G T A A C G T A G T C A G T C G A C T C G T A C G T A A C G T A G T C T C G A G T A C G T A C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

Phox2b/MA0681.1/Jaspar

Match Rank:9
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GGATCCTAATCACCTT-
------TAATTAAATTA
 A C T G A C T G C G T A A C G T A G T C A G T C G A C T C G T A C G T A A C G T A G T C T C G A G T A C G T A C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGATCCTAATCACCTT
TTGTATGCAAATTAGA--
 A C G T A C G T A C T G A C T G C G T A A C G T A G T C A G T C G A C T C G T A C G T A A C G T A G T C T C G A G T A C G T A C G A C T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T