Information for 20-GGGACTAATG (Motif 42)

A C T G A C T G A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C G T C G T A A C T G A C G T A G T C A G T C A G T C
p-value:1e-3
log p-value:-7.030e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.0 +/- 0.0bp
Average Position of motif in Background23.6 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0130.1_Otx2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GGGACTAATG---
TGTAGGGATTAATTGTC
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GGGACTAATG---
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0129.1_Otx1/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GGGACTAATG---
AGAGGGGATTAATTTAT
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GGGACTAATG--
ACCGTGACTAATTNN
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PH0124.1_Obox5_1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GGGACTAATG---
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GGGACTAATG---
NNAAGGGATTAACGANT
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

PH0137.1_Pitx1/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GGGACTAATG--
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PH0125.1_Obox5_2/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GGGACTAATG---
NANAGGGATTAATTATN
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C T G A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGGACTAATG
GGGATTANN-
 A C T G A C T G A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C T G
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGGACTAATG
GGGATTAA--
 A C T G A C T G A C T G C G T A A G T C A C G T C G T A C G T A A C G T A C T G
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T