Information for 11-AGACACGTTT (Motif 36)

C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A G T C A C T G A C G T A C T G A C G T A G T C A C G T
p-value:1e-3
log p-value:-7.030e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets14.0 +/- 0.0bp
Average Position of motif in Background42.9 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CLOCK/MA0819.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGACACGTTT-
-AACACGTGTT
 C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T

Creb3l2/MA0608.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGACACGTTT
-GCCACGTGT
 C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C T G G T A C A T G C C G T A A G T C A C T G A C G T A T C G C A G T

HEY2/MA0649.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGACACGTTT-
-GACACGTGCC
 C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C

Hes2/MA0616.1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AGACACGTTT
TAACGACACGTGC
 A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C

Arnt/MA0004.1/Jaspar

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AGACACGTTT
---CACGTG-
 C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G C T A C T G A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGACACGTTT
--GCACGTAY
 C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

HEY1/MA0823.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGACACGTTT-
-GGCACGTGTC
 C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C T G T C A G G A T C T C G A A T G C A C T G A G C T T C A G A G C T A T G C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGACACGTTT
-GHCACGTG-
 C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T

Npas2/MA0626.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGACACGTTT-
-GGCACGTGTC
 C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGACACGTTT-
---CACGTGBN
 C G T A A C T G C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A