Information for 15-DGCCHTTCTCBTBAVA (Motif 19)

C G T A A C T G A G T C A G T C G A C T A C G T A G C T A T G C A C G T A G T C A C T G A C G T A C T G G T C A T C G A C G T A
Reverse Opposite:
C G A T A C G T A C G T T A G C G T C A T A G C C T A G C G T A T A C G C T G A G T C A C G T A A C T G C T A G G T A C G A C T
p-value:1e-4
log p-value:-1.110e+01
Information Content per bp:1.641
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif346.8
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets62.2 +/- 24.7bp
Average Position of motif in Background50.4 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:DGCCHTTCTCBTBAVA
--CCATTGTTTT----
 C G T A A C T G A G T C A G T C G A C T A C G T A G C T A T G C A C G T A G T C A C T G A C G T A C T G G T C A T C G A C G T A
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:DGCCHTTCTCBTBAVA
--CCTTTGTT------
 C G T A A C T G A G T C A G T C G A C T A C G T A G C T A T G C A C G T A G T C A C T G A C G T A C T G G T C A T C G A C G T A
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:DGCCHTTCTCBTBAVA
--CCTTTGTTTT----
 C G T A A C T G A G T C A G T C G A C T A C G T A G C T A T G C A C G T A G T C A C T G A C G T A C T G G T C A T C G A C G T A
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:DGCCHTTCTCBTBAVA
-NCCATTGTTY-----
 C G T A A C T G A G T C A G T C G A C T A C G T A G C T A T G C A C G T A G T C A C T G A C G T A C T G G T C A T C G A C G T A
A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:DGCCHTTCTCBTBAVA
--CCWTTGTYYB----
 C G T A A C T G A G T C A G T C G A C T A C G T A G C T A T G C A C G T A G T C A C T G A C G T A C T G G T C A T C G A C G T A
A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:DGCCHTTCTCBTBAVA
---CTTTGT-------
 C G T A A C T G A G T C A G T C G A C T A C G T A G C T A T G C A C G T A G T C A C T G A C G T A C T G G T C A T C G A C G T A
A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:DGCCHTTCTCBTBAVA
--CCWTTGTY------
 C G T A A C T G A G T C A G T C G A C T A C G T A G C T A T G C A C G T A G T C A C T G A C G T A C T G G T C A T C G A C G T A
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:DGCCHTTCTCBTBAVA
--YCTTTGTTCC----
 C G T A A C T G A G T C A G T C G A C T A C G T A G C T A T G C A C G T A G T C A C T G A C G T A C T G G T C A T C G A C G T A
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:DGCCHTTCTCBTBAVA
-NCCATTGTTC-----
 C G T A A C T G A G T C A G T C G A C T A C G T A G C T A T G C A C G T A G T C A C T G A C G T A C T G G T C A T C G A C G T A
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--DGCCHTTCTCBTBAVA
NNNTCCTTTGTTCTNNN-
 A C G T A C G T C G T A A C T G A G T C A G T C G A C T A C G T A G C T A T G C A C G T A G T C A C T G A C G T A C T G G T C A T C G A C G T A
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T A C G T