Information for 7-ACCCAYGGSAACC (Motif 9)

T C G A A G T C G T A C A G T C C G T A A G T C C T A G C T A G A T G C T C G A C G T A G T A C A T G C
Reverse Opposite:
A T C G A C T G A C G T A G C T A T C G A G T C A G T C C T A G C G A T A C T G A C T G A C T G A G C T
p-value:1e-9
log p-value:-2.302e+01
Information Content per bp:1.802
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif37.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets54.1 +/- 31.2bp
Average Position of motif in Background49.4 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ACCCAYGGSAACC--
TACCATAGCAACGGT
 T C G A A G T C G T A C A G T C C G T A A G T C C T A G C T A G A T G C T C G A C G T A G T A C A T G C A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ACCCAYGGSAACC--
CCGCATAGCAACGGA
 T C G A A G T C G T A C A G T C C G T A A G T C C T A G C T A G A T G C T C G A C G T A G T A C A T G C A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ACCCAYGGSAACC
GTTGCCATGGCAAC-
 A C G T A C G T T C G A A G T C G T A C A G T C C G T A A G T C C T A G C T A G A T G C T C G A C G T A G T A C A T G C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ACCCAYGGSAACC------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T T C G A A G T C G T A C A G T C C G T A A G T C C T A G C T A G A T G C T C G A C G T A G T A C A T G C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ACCCAYGGSAACC
TTGCCATGGCAACN
 A C G T T C G A A G T C G T A C A G T C C G T A A G T C C T A G C T A G A T G C T C G A C G T A G T A C A T G C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.68
Offset:2
Orientation:forward strand
Alignment:ACCCAYGGSAACC-
--SCCTAGCAACAG
 T C G A A G T C G T A C A G T C C G T A A G T C C T A G C T A G A T G C T C G A C G T A G T A C A T G C A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ACCCAYGGSAACC
TTGCCATGGCAACC
 A C G T T C G A A G T C G T A C A G T C C G T A A G T C C T A G C T A G A T G C T C G A C G T A G T A C A T G C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACCCAYGGSAACC
GTTGCCATGGCAACM
 A C G T A C G T T C G A A G T C G T A C A G T C C G T A A G T C C T A G C T A G A T G C T C G A C G T A G T A C A T G C
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACCCAYGGSAACC
CGTTGCCATGGCAACG
 A C G T A C G T A C G T T C G A A G T C G T A C A G T C C G T A A G T C C T A G C T A G A T G C T C G A C G T A G T A C A T G C
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ACCCAYGGSAACC-
GTTGCCATGGCAACCG
 A C G T A C G T T C G A A G T C G T A C A G T C C G T A A G T C C T A G C T A G A T G C T C G A C G T A G T A C A T G C A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G