Information for 2-CACCAGATGGCAA (Motif 3)

A G T C C G T A A G T C A G T C C G T A A C T G C T G A A C G T A C T G A C T G A G T C C G T A T C G A
Reverse Opposite:
A G C T A C G T A C T G A G T C A G T C G T C A A G C T A G T C A C G T C T A G A C T G A C G T A C T G
p-value:1e-14
log p-value:-3.424e+01
Information Content per bp:1.937
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.9 +/- 28.3bp
Average Position of motif in Background63.4 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----CACCAGATGGCAA---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C A G T C C G T A A C T G C T G A A C G T A C T G A C T G A G T C C G T A T C G A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CACCAGATGGCAA
-AACAGATGGC--
 A G T C C G T A A G T C A G T C C G T A A C T G C T G A A C G T A C T G A C T G A G T C C G T A T C G A
A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CACCAGATGGCAA--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C A G T C C G T A A C T G C T G A A C G T A C T G A C T G A G T C C G T A T C G A A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:4
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CACCAGATGGCAA
-AACAGATGGT--
 A G T C C G T A A G T C A G T C C G T A A C T G C T G A A C G T A C T G A C T G A G T C C G T A T C G A
A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CACCAGATGGCAA
-AACAKATGGY--
 A G T C C G T A A G T C A G T C C G T A A C T G C T G A A C G T A C T G A C T G A G T C C G T A T C G A
A C G T C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CACCAGATGGCAA-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A G T C C G T A A G T C A G T C C G T A A C T G C T G A A C G T A C T G A C T G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CACCAGATGGCAA
VNAVCAGCTGGC--
 A C G T A G T C C G T A A G T C A G T C C G T A A C T G C T G A A C G T A C T G A C T G A G T C C G T A T C G A
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CACCAGATGGCAA--
AAGGCCAGATGGTCCGG
 A C G T A C G T A G T C C G T A A G T C A G T C C G T A A C T G C T G A A C G T A C T G A C T G A G T C C G T A T C G A A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CACCAGATGGCAA
-AACAGATGGTCN
 A G T C C G T A A G T C A G T C C G T A A C T G C T G A A C G T A C T G A C T G A G T C C G T A T C G A
A C G T C G T A T G C A G T A C C G T A A C T G T G C A A C G T A T C G A C T G G A C T A T G C C A T G

NEUROD2/MA0668.1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CACCAGATGGCAA
-ACCATATGGC--
 A G T C C G T A A G T C A G T C C G T A A C T G C T G A A C G T A C T G A C T G A G T C C G T A T C G A
A C G T C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C A C G T A C G T