Information for 8-CACCAGCGTCTCCATG (Motif 23)

A G T C C G T A A T G C A G T C C T G A A C T G A G T C A C T G A C G T A G T C A C G T A G T C A G T C G T C A A G C T A C T G
Reverse Opposite:
A G T C C T G A A C G T A C T G A C T G C G T A A C T G C G T A A G T C C T A G A G T C A G C T A C T G A T C G A C G T C T A G
p-value:1e-8
log p-value:-1.937e+01
Information Content per bp:1.884
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 22.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CACCAGCGTCTCCATG---
--NTNNCGTATCCAAGTNN
 A G T C C G T A A T G C A G T C C T G A A C T G A G T C A C T G A C G T A G T C A C G T A G T C A G T C G T C A A G C T A C T G A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CACCAGCGTCTCCATG
TGCCTGCGYCMCCTT-
 A G T C C G T A A T G C A G T C C T G A A C T G A G T C A C T G A C G T A G T C A C G T A G T C A G T C G T C A A G C T A C T G
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CACCAGCGTCTCCATG-------
NNTNGNNGTAACCAAGNNNNAGN
 A G T C C G T A A T G C A G T C C T G A A C T G A G T C A C T G A C G T A G T C A C G T A G T C A G T C G T C A A G C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:4
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CACCAGCGTCTCCATG---
----NNNGTAACTANGNNA
 A G T C C G T A A T G C A G T C C T G A A C T G A G T C A C T G A C G T A G T C A C G T A G T C A G T C G T C A A G C T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CACCAGCGTCTCCATG----
------NGTTGCCATGGCAA
 A G T C C G T A A T G C A G T C C T G A A C T G A G T C A C T G A C G T A G T C A C G T A G T C A G T C G T C A A G C T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CACCAGCGTCTCCATG
---VBSYGTCTGG---
 A G T C C G T A A T G C A G T C C T G A A C T G A G T C A C T G A C G T A G T C A C G T A G T C A G T C G T C A A G C T A C T G
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:CACCAGCGTCTCCATG-----
-------GTTGCCATGGNAAC
 A G T C C G T A A T G C A G T C C T G A A C T G A G T C A C T G A C G T A G T C A C G T A G T C A G T C G T C A A G C T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:8
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----CACCAGCGTCTCCATG
ADGGYAGYAGCATCT-----
 A C G T A C G T A C G T A C G T A G T C C G T A A T G C A G T C C T G A A C T G A G T C A C T G A C G T A G T C A C G T A G T C A G T C G T C A A G C T A C T G
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.48
Offset:5
Orientation:forward strand
Alignment:CACCAGCGTCTCCATG
-----CTGTCTGG---
 A G T C C G T A A T G C A G T C C T G A A C T G A G T C A C T G A C G T A G T C A C G T A G T C A G T C G T C A A G C T A C T G
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:10
Score:0.48
Offset:3
Orientation:forward strand
Alignment:CACCAGCGTCTCCATG
---CAACGTCCGCGG-
 A G T C C G T A A T G C A G T C C T G A A C T G A G T C A C T G A C G T A G T C A C G T A G T C A G T C G T C A A G C T A C T G
A C G T A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G A C G T