Information for 25-AGAGAGTAAGACA (Motif 44)

C G T A A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A G T C A C G T A C G T C G T A A G T C A C G T A G T C A C G T A G T C A C G T
p-value:1e-3
log p-value:-7.934e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.0 +/- 0.0bp
Average Position of motif in Background71.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGAGAGTAAGACA
-AGGTGHCAGACA
 C G T A A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGAGAGTAAGACA-
-AGGTGNCAGACAG
 C G T A A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----AGAGAGTAAGACA--------
CACAAGGGARWARGRCACCATGAGG
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C T G C A G T A C C T G A C T G A T A C G C T A G C T A G C T G A T C A G C G A T T C G A C T G A C T A G T C A G A G T C C G T A A G T C G T A C C T G A C G A T A C T G C T G A C T A G A T C G

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----AGAGAGTAAGACA
NNNACCGAGAGTNNN---
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T A C G T A C G T

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----AGAGAGTAAGACA---
AADGAGVCANYASTACAGNC
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGTAAGACA
GAAAGTGAAAGT--
 A C G T C G T A A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T

SPIC/MA0687.1/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGAGAGTAAGACA
AAAAAGAGGAAGTA-
 A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A
G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A A C G T

SPIB/MA0081.1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGAGAGTAAGACA
--AGAGGAA----
 C G T A A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A
A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AGAGAGTAAGACA--
AGATGKDGAGATAAG
 C G T A A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A A C G T A C G T
C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

PRDM1/MA0508.1/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--AGAGAGTAAGACA
AGAAAGTGAAAGTGA
 A C G T A C G T C G T A A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C C G T A
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A