Information for 20-CTGTATTATG (Motif 43)

A G T C A C G T A C T G A C G T C G T A A C G T A C G T C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T C G T A C G T A A C G T C G T A A G T C C G T A A C T G
p-value:1e-3
log p-value:-7.934e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 0.0bp
Average Position of motif in Background79.4 +/- 15.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CTGTATTATG---
NNCTNAATTATGANN
 A C G T A C G T A G T C A C G T A C T G A C G T C G T A A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTGTATTATG---
-TGAATTATGCAT
 A G T C A C G T A C T G A C G T C G T A A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

PB0187.1_Tcf7_2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGTATTATG-----
CCGTATTATAAACAA
 A G T C A C G T A C T G A C G T C G T A A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

PB0185.1_Tcf1_2/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CTGTATTATG
TTGCCCGGATTAGG
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T C G T A A C G T A C G T C G T A A C G T A C T G
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

PB0121.1_Foxj3_2/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTGTATTATG-----
NNCTTTGTTTTGNTNNN
 A C G T A C G T A G T C A C G T A C T G A C G T C G T A A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGTATTATG
NGGGATTA--
 A G T C A C G T A C T G A C G T C G T A A C G T A C G T C G T A A C G T A C T G
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTGTATTATG---
-TGATTTATGGCC
 A G T C A C G T A C T G A C G T C G T A A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTGTATTATG---
WYATGCATWATGCAT
 A C G T A C G T A G T C A C G T A C T G A C G T C G T A A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

ZNF143/MA0088.2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTGTATTATG----
CAATGCATTGTGGGTA
 A C G T A C G T A G T C A C G T A C T G A C G T C G T A A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

ZNF410/MA0752.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTGTATTATG-------
GANTATTATGGGATGGA
 A G T C A C G T A C T G A C G T C G T A A C G T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A T G T C G A C A T G G A C T C T G A A G C T A C G T C T G A C A G T A T C G A C T G C A T G G T C A C G A T C T A G A C T G T G C A