Information for 3-GGCMGGCAGRMAGRCA (Motif 4)

A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T A G A T G C C G T A
Reverse Opposite:
A C G T A T C G A G T C A G T C A C G T A C T G A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C
p-value:1e-7
log p-value:-1.804e+01
Information Content per bp:1.890
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif18.18%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets24.0 +/- 8.7bp
Average Position of motif in Background67.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGCMGGCAGRMAGRCA
--CTGGCAGNCTGCCA
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T A G A T G C C G T A
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCMGGCAGRMAGRCA--
GGAAGGAAGGAAGGAAGG
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T A G A T G C C G T A A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGCMGGCAGRMAGRCA----
-----SCAGYCADGCATGAC
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T A G A T G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GGCMGGCAGRMAGRCA--
--TTGGCANNNTGCCAAG
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T A G A T G C C G T A A C G T A C G T
A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGCMGGCAGRMAGRCA-
---TGGCACCATGCCAA
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T A G A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GGCMGGCAGRMAGRCA-
----AGGTGNCAGACAG
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T A G A T G C C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GGCMGGCAGRMAGRCA
-----CCAGACRSVB-
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T A G A T G C C G T A
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GGCMGGCAGRMAGRCA
--CWGGCGGGAA----
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T A G A T G C C G T A
A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GGCMGGCAGRMAGRCA
-----CCAGACAG---
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T A G A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GGCMGGCAGRMAGRCA
----AGGTGHCAGACA
 A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A G T A C C G T A A C T G C T A G A T G C C G T A
A C G T A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A