Information for 22-GTCCAGTCTGATC (Motif 35)

A C T G A C G T A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C T G C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C T G A C T G C G T A A G T C
p-value:1e-3
log p-value:-8.628e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GTCCAGTCTGATC
---TWGTCTGV--
 A C T G A C G T A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C T G C G T A A C G T A G T C
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GTCCAGTCTGATC
---CTGTCTGG--
 A C T G A C G T A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C T G C G T A A C G T A G T C
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTCCAGTCTGATC--
AGNACAGNCTGTTCTN
 A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C T G C G T A A C G T A G T C A C G T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

PB0023.1_Gata6_1/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GTCCAGTCTGATC------
--NNANTCTTATCTNNNNN
 A C T G A C G T A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C T G C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C C G T A G C T A G A C T A C G T A T G C C G A T C G A T C T G A C G A T G T A C C G A T G T A C A C G T G C T A C A G T G C T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GTCCAGTCTGATC
-VBSYGTCTGG--
 A C T G A C G T A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C T G C G T A A C G T A G T C
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GTCCAGTCTGATC--
GVACAGNMTGTYCTB
 A C T G A C G T A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C T G C G T A A C G T A G T C A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GTCCAGTCTGATC
VAGRACAKWCTGTYC
 A C G T A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C T G C G T A A C G T A G T C
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTCCAGTCTGATC
TGCCCAGNHW----
 A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C T G C G T A A C G T A G T C
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTCCAGTCTGATC---
NNTNNTGTCTGGNNTNG
 A C G T A C T G A C G T A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C T G C G T A A C G T A G T C A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GTCCAGTCTGATC--
GAACADWATGTTCTT
 A C T G A C G T A G T C A G T C C G T A A C T G A C G T A G T C A C G T A C T G C G T A A C G T A G T C A C G T A C G T
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T