Information for 1-KWRGGSTTRATGR (Motif 2)

A C T G C G A T C T A G A C T G A C T G A T G C A C G T A G C T C T G A C G T A A C G T C T A G C T G A
Reverse Opposite:
A G C T A G T C C G T A A C G T A G C T C T G A C G T A A T C G A G T C A G T C A G T C C G T A G T A C
p-value:1e-9
log p-value:-2.078e+01
Information Content per bp:1.816
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif11.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets64.7 +/- 33.9bp
Average Position of motif in Background54.7 +/- 15.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:KWRGGSTTRATGR--
-----GTTAATGGCC
 A C T G C G A T C T A G A C T G A C T G A T G C A C G T A G C T C T G A C G T A A C G T C T A G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.67
Offset:5
Orientation:forward strand
Alignment:KWRGGSTTRATGR
-----GKTAATGR
 A C T G C G A T C T A G A C T G A C T G A T G C A C G T A G C T C T G A C G T A A C G T C T A G C T G A
A C G T A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--KWRGGSTTRATGR--
TGAAGGGATTAATCATC
 A C G T A C G T A C T G C G A T C T A G A C T G A C T G A T G C A C G T A G C T C T G A C G T A A C G T C T A G C T G A A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

NKX6-2/MA0675.1/Jaspar

Match Rank:4
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:KWRGGSTTRATGR-
------TTAATTAN
 A C T G C G A T C T A G A C T G A C T G A T G C A C G T A G C T C T G A C G T A A C G T C T A G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--KWRGGSTTRATGR--
TGTAGGGATTAATTGTC
 A C G T A C G T A C T G C G A T C T A G A C T G A C T G A T G C A C G T A G C T C T G A C G T A A C G T C T A G C T G A A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

NKX6-1/MA0674.1/Jaspar

Match Rank:6
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:KWRGGSTTRATGR-
------TTAATTAN
 A C T G C G A T C T A G A C T G A C T G A T G C A C G T A G C T C T G A C G T A A C G T C T A G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:KWRGGSTTRATGR
---TGATTGATGA
 A C T G C G A T C T A G A C T G A C T G A T G C A C G T A G C T C T G A C G T A A C G T C T A G C T G A
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--KWRGGSTTRATGR--
AGAGGGGATTAATTTAT
 A C G T A C G T A C T G C G A T C T A G A C T G A C T G A T G C A C G T A G C T C T G A C G T A A C G T C T A G C T G A A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:forward strand
Alignment:KWRGGSTTRATGR--
---TGATTRATGGCY
 A C T G C G A T C T A G A C T G A C T G A T G C A C G T A G C T C T G A C G T A A C G T C T A G C T G A A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PH0073.1_Hoxc9/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:KWRGGSTTRATGR-----
--NNAATTAATGACCNNN
 A C T G C G A T C T A G A C T G A C T G A T G C A C G T A G C T C T G A C G T A A C G T C T A G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C