Information for 11-CGCCCATTGGCTG (Motif 18)

A G T C A T C G A T G C A G T C T G A C G T C A A G C T A C G T A T C G C A T G A G T C A G C T A T C G
Reverse Opposite:
A T G C C T G A A C T G G A T C A T G C C G T A T C G A C A G T A C T G C T A G A T C G T A G C C T A G
p-value:1e-9
log p-value:-2.227e+01
Information Content per bp:1.787
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif129.3
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets40.1 +/- 24.9bp
Average Position of motif in Background50.6 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:CGCCCATTGGCTG
--CCGATTGGCT-
 A G T C A T C G A T G C A G T C T G A C G T C A A G C T A C G T A T C G C A T G A G T C A G C T A T C G
A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CGCCCATTGGCTG--
---TGATTGGCTANN
 A G T C A T C G A T G C A G T C T G A C G T C A A G C T A C G T A T C G C A T G A G T C A G C T A T C G A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGCCCATTGGCTG
CCGCCCAAGGGCAG
 A C G T A G T C A T C G A T G C A G T C T G A C G T C A A G C T A C G T A T C G C A T G A G T C A G C T A T C G
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGCCCATTGGCTG----
--CTGATTGGTCNATTT
 A G T C A T C G A T G C A G T C T G A C G T C A A G C T A C G T A T C G C A T G A G T C A G C T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.63
Offset:6
Orientation:forward strand
Alignment:CGCCCATTGGCTG
------TTGGCA-
 A G T C A T C G A T G C A G T C T G A C G T C A A G C T A C G T A T C G C A T G A G T C A G C T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CGCCCATTGGCTG-
------TWGTCTGV
 A G T C A T C G A T G C A G T C T G A C G T C A A G C T A C G T A T C G C A T G A G T C A G C T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CGCCCATTGGCTG-
-----NTTGGCANN
 A G T C A T C G A T G C A G T C T G A C G T C A A G C T A C G T A T C G C A T G A G T C A G C T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CGCCCATTGGCTG--
TGTTCCCATTGTGTACT
 A C G T A C G T A G T C A T C G A T G C A G T C T G A C G T C A A G C T A C G T A T C G C A T G A G T C A G C T A T C G A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CGCCCATTGGCTG
---CCATTGTTYB
 A G T C A T C G A T G C A G T C T G A C G T C A A G C T A C G T A T C G C A T G A G T C A G C T A T C G
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGCCCATTGGCTG--
NNNCCATTGTGTNAN
 A G T C A T C G A T G C A G T C T G A C G T C A A G C T A C G T A T C G C A T G A G T C A G C T A T C G A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G