Information for 2-CTAACAAGTTCAC (Motif 3)

A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T C T A G C G T A C G T A A G T C A C G T C G A T A C T G A C G T G A C T C G T A A C T G
p-value:1e-6
log p-value:-1.502e+01
Information Content per bp:1.943
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif5.41%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.2 +/- 21.2bp
Average Position of motif in Background60.0 +/- 9.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CTAACAAGTTCAC
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CTAACAAGTTCAC
-----AAGGTCAC
 A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTAACAAGTTCAC
--ATCAAGGTCA-
 A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTAACAAGTTCAC-
----CAAGGHCANV
 A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTAACAAGTTCAC
---TCAAGGTCAN
 A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C
A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

PB0175.1_Sox4_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTAACAAGTTCAC-
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTAACAAGTTCAC
---TCAAGGTCAT
 A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C
A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

PH0092.1_Lhx2/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CTAACAAGTTCAC
NNNNNCTAATTAGTTTA-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTAACAAGTTCAC
NNNTAACAATTATAN
 A C G T A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTAACAAGTTCAC
NNCNNAACAATTNT--
 A C G T A C G T A C G T A G T C A C G T C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A G T C C G T A A G T C
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T