Information for 2-CAGGCAGGAAGGCAGV (Motif 2)

A T G C G T C A A C T G C T A G A G T C C T G A A C T G C T A G G T C A C T G A A C T G C T A G G A T C C G T A C T A G T C G A
Reverse Opposite:
A C G T A G T C A C G T C T A G A G T C A G T C A G C T A C G T A G T C A G T C A G C T A C T G A G T C A G T C A C G T A T C G
p-value:1e-7
log p-value:-1.613e+01
Information Content per bp:1.774
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif8.11%
Number of Background Sequences with motif11.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets38.4 +/- 21.1bp
Average Position of motif in Background57.0 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAGGCAGGAAGGCAGV
-TGGCAGNCTGCCAG-
 A T G C G T C A A C T G C T A G A G T C C T G A A C T G C T A G G T C A C T G A A C T G C T A G G A T C C G T A C T A G T C G A
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAGGCAGGAAGGCAGV
CWGGCGGGAA------
 A T G C G T C A A C T G C T A G A G T C C T G A A C T G C T A G G T C A C T G A A C T G C T A G G A T C C G T A C T A G T C G A
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

E2F4/MA0470.1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGGCAGGAAGGCAGV
-GGGCGGGAAGG----
 A T G C G T C A A C T G C T A G A G T C C T G A A C T G C T A G G T C A C T G A A C T G C T A G G A T C C G T A C T A G T C G A
A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G A C G T A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGGCAGGAAGGCAGV
-GGGCGGGAAGG----
 A T G C G T C A A C T G C T A G A G T C C T G A A C T G C T A G G T C A C T G A A C T G C T A G G A T C C G T A C T A G T C G A
A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGGCAGGAAGGCAGV
GGAAGGAAGGAAGGAAGG
 A C G T A C G T A T G C G T C A A C T G C T A G A G T C C T G A A C T G C T A G G T C A C T G A A C T G C T A G G A T C C G T A C T A G T C G A
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAGGCAGGAAGGCAGV
-TGGCACCATGCCAA-
 A T G C G T C A A C T G C T A G A G T C C T G A A C T G C T A G G T C A C T G A A C T G C T A G G A T C C G T A C T A G T C G A
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAGGCAGGAAGGCAGV
TTGGCANNNTGCCAAG
 A T G C G T C A A C T G C T A G A G T C C T G A A C T G C T A G G T C A C T G A A C T G C T A G G A T C C G T A C T A G T C G A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAGGCAGGAAGGCAGV
--GGCGGGAARN----
 A T G C G T C A A C T G C T A G A G T C C T G A A C T G C T A G G T C A C T G A A C T G C T A G G A T C C G T A C T A G T C G A
A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAGGCAGGAAGGCAGV
---ACAGGAAGTG---
 A T G C G T C A A C T G C T A G A G T C C T G A A C T G C T A G G T C A C T G A A C T G C T A G G A T C C G T A C T A G T C G A
A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T

ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAGGCAGGAAGGCAGV
--AACCGGAAGT----
 A T G C G T C A A C T G C T A G A G T C C T G A A C T G C T A G G T C A C T G A A C T G C T A G G A T C C G T A C T A G T C G A
A C G T A C G T T C G A C T G A T A G C T G A C T C A G T C A G C G T A C G T A T C A G A G C T A C G T A C G T A C G T A C G T