Information for 7-TWCYATRSMMRWGYTK (Motif 8)

A C G T C G A T A G T C G A T C C G T A C G A T C T G A T A C G G T C A G T A C C T A G C G A T A C T G A G C T A C G T A C G T
Reverse Opposite:
G T C A C G T A C T G A A G T C C G T A G A C T C A T G A C G T A T C G G A C T C G T A A C G T C T A G C T A G C G T A C G T A
p-value:1e-6
log p-value:-1.605e+01
Information Content per bp:1.736
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.5 +/- 3.5bp
Average Position of motif in Background71.0 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX21/MA0866.1/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TWCYATRSMMRWGYTK
AACAATGGTAGTGTT-
 A C G T C G A T A G T C G A T C C G T A C G A T C T G A T A C G G T C A G T A C C T A G C G A T A C T G A G C T A C G T A C G T
C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T A C G T

Sox1/MA0870.1/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TWCYATRSMMRWGYTK
AACAATAACATTGTT-
 A C G T C G A T A G T C G A T C C G T A C G A T C T G A T A C G G T C A G T A C C T A G C G A T A C T G A G C T A C G T A C G T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TWCYATRSMMRWGYTK
GAACAATTGCAGTGTT-
 A C G T A C G T C G A T A G T C G A T C C G T A C G A T C T G A T A C G G T C A G T A C C T A G C G A T A C T G A G C T A C G T A C G T
C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TWCYATRSMMRWGYTK
GGTTGCCATGGCAA-----
 A C G T A C G T A C G T A C G T C G A T A G T C G A T C C G T A C G A T C T G A T A C G G T C A G T A C C T A G C G A T A C T G A G C T A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TWCYATRSMMRWGYTK
ATTTTCCATT---------
 A C G T A C G T A C G T A C G T C G A T A G T C G A T C C G T A C G A T C T G A T A C G G T C A G T A C C T A G C G A T A C T G A G C T A C G T A C G T
C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox11/MA0869.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TWCYATRSMMRWGYTK
AACAATTTCAGTGTT-
 A C G T C G A T A G T C G A T C C G T A C G A T C T G A T A C G G T C A G T A C C T A G C G A T A C T G A G C T A C G T A C G T
C G T A C G T A A G T C C G T A C G T A A C G T A G C T C A G T A G T C C G T A A C T G A C G T A C T G A C G T A G C T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TWCYATRSMMRWGYTK
ATTTGCATAACAATG---
 A C G T A C G T A C G T C G A T A G T C G A T C C G T A C G A T C T G A T A C G G T C A G T A C C T A G C G A T A C T G A G C T A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T A C G T A C G T

RFX5/MA0510.2/Jaspar

Match Rank:8
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---TWCYATRSMMRWGYTK
NGTTGCCATGGCAACG---
 A C G T A C G T A C G T A C G T C G A T A G T C G A T C C G T A C G A T C T G A T A C G G T C A G T A C C T A G C G A T A C T G A G C T A C G T A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G A C G T A C G T A C G T

Stat6/MA0520.1/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--TWCYATRSMMRWGYTK
ANTTCTCAGGAANNN---
 A C G T A C G T A C G T C G A T A G T C G A T C C G T A C G A T C T G A T A C G G T C A G T A C C T A G C G A T A C T G A G C T A C G T A C G T
C T G A A C G T A G C T A C G T G T A C G A C T A T G C G C T A C T A G C A T G C G T A C G T A T C G A G C A T T A C G A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---TWCYATRSMMRWGYTK
NGTTGCCATGGCAA-----
 A C G T A C G T A C G T A C G T C G A T A G T C G A T C C G T A C G A T C T G A T A C G G T C A G T A C C T A G C G A T A C T G A G C T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T A C G T A C G T