Information for 20-AGGTCAAGGAGGT (Motif 41)

C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C A C G T A G T C A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C G T
p-value:1e-3
log p-value:-7.656e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.55%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AGGTCAAGGAGGT
AGGTCAAGGTCA-
 C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAAGGAGGT-----
NGAGGTCANNGAGTTCANNN
 A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGGTCAAGGAGGT
AGGTCAAGGTCA-
 C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGTCAAGGAGGT--
GGGTCAACGAGTTCA
 C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T A C G T A C G T
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAAGGAGGT
TRAGGTCA-------
 A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGTCAAGGAGGT
AGGTCA-------
 C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGGTCAAGGAGGT
CAAAGGTCAAGGG---
 A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGGTCAAGGAGGT
ATCAAGGTCA-------
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAGGAGGT
AAGGTCAC------
 A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAAGGAGGT
AGRGGTCA-------
 A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C T G C G T A A C T G A C T G A C G T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T