Information for 1-CCWTGACGTRCCGTTC (Motif 1)

A G T C A G T C C G T A A G C T A C T G G C T A A G T C C T A G C A G T C T G A A T G C G T A C A C T G G C A T A C G T A G T C
Reverse Opposite:
T C A G T C G A C G T A T G A C A C T G A T C G A G C T G T C A G A T C C T A G C G A T T G A C T C G A C G A T C T A G A C T G
p-value:1e-12
log p-value:-2.834e+01
Information Content per bp:1.643
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif16.13%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets28.6 +/- 20.9bp
Average Position of motif in Background48.1 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CCWTGACGTRCCGTTC
TGWCCTCARNTGACC----
 A C G T A C G T A C G T A G T C A G T C C G T A A G C T A C T G G C T A A G T C C T A G C A G T C T G A A T G C G T A C A C T G G C A T A C G T A G T C
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CCWTGACGTRCCGTTC
---NNACTTACCTN--
 A G T C A G T C C G T A A G C T A C T G G C T A A G T C C T A G C A G T C T G A A T G C G T A C A C T G G C A T A C G T A G T C
A C G T A C G T A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CCWTGACGTRCCGTTC
---NNACTTGCCTT--
 A G T C A G T C C G T A A G C T A C T G G C T A A G T C C T A G C A G T C T G A A T G C G T A C A C T G G C A T A C G T A G T C
A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:CCWTGACGTRCCGTTC---
-----NNGCACCTTTCTCC
 A G T C A G T C C G T A A G C T A C T G G C T A A G T C C T A G C A G T C T G A A T G C G T A C A C T G G C A T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----CCWTGACGTRCCGTTC
NAAACCGGTTNNAACCGGTT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G C T A C T G G C T A A G T C C T A G C A G T C T G A A T G C G T A C A C T G G C A T A C G T A G T C
T G A C T C G A C T G A C T G A A T G C G A T C C T A G T A C G G A C T G A C T G A T C T C G A C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CCWTGACGTRCCGTTC
TCCCAGMCRAGCCCC--
 A C G T A G T C A G T C C G T A A G C T A C T G G C T A A G T C C T A G C A G T C T G A A T G C G T A C A C T G G C A T A C G T A G T C
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C A C G T A C G T

HES7/MA0822.1/Jaspar

Match Rank:7
Score:0.46
Offset:1
Orientation:forward strand
Alignment:CCWTGACGTRCCGTTC
-TGGCACGTGCCA---
 A G T C A G T C C G T A A G C T A C T G G C T A A G T C C T A G C A G T C T G A A T G C G T A C A C T G G C A T A C G T A G T C
A C G T G A C T T C A G T C A G G A T C T C G A A G T C C T A G G A C T T C A G G A T C A G T C C T G A A C G T A C G T A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:8
Score:0.46
Offset:-3
Orientation:reverse strand
Alignment:---CCWTGACGTRCCGTTC
TGACCTTTCGTGACCTT--
 A C G T A C G T A C G T A G T C A G T C C G T A A G C T A C T G G C T A A G T C C T A G C A G T C T G A A T G C G T A C A C T G G C A T A C G T A G T C
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T A C G T A C G T

HES5/MA0821.1/Jaspar

Match Rank:9
Score:0.45
Offset:1
Orientation:forward strand
Alignment:CCWTGACGTRCCGTTC
-CGGCACGTGCCA---
 A G T C A G T C C G T A A G C T A C T G G C T A A G T C C T A G C A G T C T G A A T G C G T A C A C T G G C A T A C G T A G T C
A C G T G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:10
Score:0.45
Offset:4
Orientation:forward strand
Alignment:CCWTGACGTRCCGTTC
----TACGTGCV----
 A G T C A G T C C G T A A G C T A C T G G C T A A G T C C T A G C A G T C T G A A T G C G T A C A C T G G C A T A C G T A G T C
A C G T A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T A C G T A C G T