Information for 12-CCGAAGTTCA (Motif 19)

G T A C A G T C C T A G T G C A C G T A C T A G A G C T C G A T A G T C G T C A
Reverse Opposite:
C A G T A C T G C G T A T C G A A G T C C G A T A C G T G A T C C T A G A C T G
p-value:1e-8
log p-value:-1.914e+01
Information Content per bp:1.727
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif49.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets58.6 +/- 23.9bp
Average Position of motif in Background48.3 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCGAAGTTCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T G T A C A G T C C T A G T G C A C G T A C T A G A G C T C G A T A G T C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------CCGAAGTTCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C A G T C C T A G T G C A C G T A C T A G A G C T C G A T A G T C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCGAAGTTCA-
-CAAAGGTCAG
 G T A C A G T C C T A G T G C A C G T A C T A G A G C T C G A T A G T C G T C A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCGAAGTTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T G T A C A G T C C T A G T G C A C G T A C T A G A G C T C G A T A G T C G T C A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCGAAGTTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T G T A C A G T C C T A G T G C A C G T A C T A G A G C T C G A T A G T C G T C A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCGAAGTTCA----
GGCAAAAGTCCAATAA
 A C G T A C G T G T A C A G T C C T A G T G C A C G T A C T A G A G C T C G A T A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCGAAGTTCA-
-TCAAGGTCAN
 G T A C A G T C C T A G T G C A C G T A C T A G A G C T C G A T A G T C G T C A A C G T
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

Esrrg/MA0643.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCGAAGTTCA-
-TCAAGGTCAT
 G T A C A G T C C T A G T G C A C G T A C T A G A G C T C G A T A G T C G T C A A C G T
A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CCGAAGTTCA-
---AAGGTCAC
 G T A C A G T C C T A G T G C A C G T A C T A G A G C T C G A T A G T C G T C A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCGAAGTTCA----
TGCCAAAATAAACANN
 A C G T A C G T G T A C A G T C C T A G T G C A C G T A C T A G A G C T C G A T A G T C G T C A A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A