Information for 5-GGCTGSCAGCSSCGCY (Motif 16)

C T A G A C T G A G T C A C G T A C T G A T C G A T G C C G T A A C T G A G T C A T C G A T C G A G T C A C T G A G T C A G C T
Reverse Opposite:
C T G A A C T G A G T C A C T G A T G C A T G C A C T G A G T C A C G T A T C G A T G C A G T C C G T A A C T G A G T C A G T C
p-value:1e-9
log p-value:-2.105e+01
Information Content per bp:1.894
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 20.4bp
Average Position of motif in Background16.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCTGSCAGCSSCGCY
VGCTGWCAVB------
 C T A G A C T G A G T C A C G T A C T G A T C G A T G C C G T A A C T G A G T C A T C G A T C G A G T C A C T G A G T C A G C T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGCTGSCAGCSSCGCY
CTGGCAGNCTGCCA----
 A C G T A C G T C T A G A C T G A G T C A C G T A C T G A T C G A T G C C G T A A C T G A G T C A T C G A T C G A G T C A C T G A G T C A G C T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGCTGSCAGCSSCGCY
-CTTGGCAA-------
 C T A G A C T G A G T C A C G T A C T G A T C G A T G C C G T A A C T G A G T C A T C G A T C G A G T C A C T G A G T C A G C T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGCTGSCAGCSSCGCY
-SCTGTCARCACC---
 C T A G A C T G A G T C A C G T A C T G A T C G A T G C C G T A A C T G A G T C A T C G A T C G A G T C A C T G A G T C A G C T
A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GGCTGSCAGCSSCGCY
NGTAGGTTGGCATNNN----
 A C G T A C G T A C G T A C G T C T A G A C T G A G T C A C G T A C T G A T C G A T G C C G T A A C T G A G T C A T C G A T C G A G T C A C T G A G T C A G C T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGCTGSCAGCSSCGCY
-AGCAACAGCCGCACC
 C T A G A C T G A G T C A C G T A C T G A T C G A T G C C G T A A C T G A G T C A T C G A T C G A G T C A C T G A G T C A G C T
A C G T T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGCTGSCAGCSSCGCY
GGTTGGCAT-------
 C T A G A C T G A G T C A C G T A C T G A T C G A T G C C G T A A C T G A G T C A T C G A T C G A G T C A C T G A G T C A G C T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCTGSCAGCSSCGCY
CTGTCTGTCACCT-----
 A C G T A C G T C T A G A C T G A G T C A C G T A C T G A T C G A T G C C G T A A C T G A G T C A T C G A T C G A G T C A C T G A G T C A G C T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGCTGSCAGCSSCGCY
TGTCTGDCACCT-----
 A C G T C T A G A C T G A G T C A C G T A C T G A T C G A T G C C G T A A C T G A G T C A T C G A T C G A G T C A C T G A G T C A G C T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GGCTGSCAGCSSCGCY
----CGCAGCTGCG--
 C T A G A C T G A G T C A C G T A C T G A T C G A T G C C G T A A C T G A G T C A T C G A T C G A G T C A C T G A G T C A G C T
A C G T A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T