Information for 6-CCTAAGCCTCTCC (Motif 11)

A G T C A G T C C A G T G C T A C T G A C T A G G A T C G T A C A C G T A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C T G C G T A A C T G C T A G G A T C A G C T C G A T G T C A C T A G A C T G
p-value:1e-9
log p-value:-2.211e+01
Information Content per bp:1.804
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif19.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.3 +/- 23.3bp
Average Position of motif in Background48.0 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCTAAGCCTCTCC
-CTAATCCTCTT-
 A G T C A G T C C A G T G C T A C T G A C T A G G A T C G T A C A C G T A G T C A C G T A G T C A G T C
A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCTAAGCCTCTCC--
----AGCCACTCAAG
 A G T C A G T C C A G T G C T A C T G A C T A G G A T C G T A C A C G T A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

MZF1/MA0056.1/Jaspar

Match Rank:3
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:CCTAAGCCTCTCC-
--------TCCCCA
 A G T C A G T C C A G T G C T A C T G A C T A G G A T C G T A C A C G T A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CCTAAGCCTCTCC-
----AASCACTCAA
 A G T C A G T C C A G T G C T A C T G A C T A G G A T C G T A C A C G T A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

KLF5/MA0599.1/Jaspar

Match Rank:5
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CCTAAGCCTCTCC--
-----GCCCCGCCCC
 A G T C A G T C C A G T G C T A C T G A C T A G G A T C G T A C A C G T A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C G T A C A G T C C T A G A G T C A G T C A G T C G A T C

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.53
Offset:8
Orientation:forward strand
Alignment:CCTAAGCCTCTCC-
--------GCTCCG
 A G T C A G T C C A G T G C T A C T G A C T A G G A T C G T A C A C G T A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CCTAAGCCTCTCC--
-----GCCMCRCCCH
 A G T C A G T C C A G T G C T A C T G A C T A G G A T C G T A C A C G T A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G G T A C G A T C G T C A G A T C C T G A A G T C A G T C A G T C G C A T

POL003.1_GC-box/Jaspar

Match Rank:8
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CCTAAGCCTCTCC----
---NAGCCCCGCCCCCN
 A G T C A G T C C A G T G C T A C T G A C T A G G A T C G T A C A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:CCTAAGCCTCTCC--
-----NSCACTYVAV
 A G T C A G T C C A G T G C T A C T G A C T A G G A T C G T A C A C G T A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---CCTAAGCCTCTCC-
NNNATTAATCCGNTTNA
 A C G T A C G T A C G T A G T C A G T C C A G T G C T A C T G A C T A G G A T C G T A C A C G T A G T C A C G T A G T C A G T C A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A