Information for 9-RTCCGCAGCTGCG (Motif 18)

T C G A A C G T A G T C A G T C A C T G A G T C C T G A A T C G A G T C A C G T A C T G A T G C A C T G
Reverse Opposite:
G T A C A T C G A G T C C G T A A C T G A T G C A G C T A C T G T A G C A C T G A C T G T G C A A G C T
p-value:1e-7
log p-value:-1.787e+01
Information Content per bp:1.829
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.2 +/- 21.0bp
Average Position of motif in Background34.3 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.82
Offset:3
Orientation:forward strand
Alignment:RTCCGCAGCTGCG
---CGCAGCTGCG
 T C G A A C G T A G T C A G T C A C T G A G T C C T G A A T C G A G T C A C G T A C T G A T G C A C T G
A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:RTCCGCAGCTGCG----
CTCAGCAGCTGCTACTG
 T C G A A C G T A G T C A G T C A C T G A G T C C T G A A T C G A G T C A C G T A C T G A T G C A C T G A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:RTCCGCAGCTGCG
--CAGCAGCTGN-
 T C G A A C G T A G T C A G T C A C T G A G T C C T G A A T C G A G T C A C G T A C T G A T G C A C T G
A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T

Myog/MA0500.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:RTCCGCAGCTGCG
--NNGCAGCTGTC
 T C G A A C G T A G T C A G T C A C T G A G T C C T G A A T C G A G T C A C G T A C T G A T G C A C T G
A C G T A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:RTCCGCAGCTGCG-
----GCAGCTGTNN
 T C G A A C G T A G T C A G T C A C T G A G T C C T G A A T C G A G T C A C G T A C T G A T G C A C T G A C G T
A C G T A C G T A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:6
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:RTCCGCAGCTGCG--
---NVCAGCTGBBNN
 T C G A A C G T A G T C A G T C A C T G A G T C C T G A A T C G A G T C A C G T A C T G A T G C A C T G A C G T A C G T
A C G T A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

Tcf12/MA0521.1/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:RTCCGCAGCTGCG
--NNGCAGCTGTT
 T C G A A C G T A G T C A G T C A C T G A G T C C T G A A T C G A G T C A C G T A C T G A T G C A C T G
A C G T A C G T A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:RTCCGCAGCTGCG----
ATCCACAGGTGCGAAAA
 T C G A A C G T A G T C A G T C A C T G A G T C C T G A A T C G A G T C A C G T A C T G A T G C A C T G A C G T A C G T A C G T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:RTCCGCAGCTGCG
-NNAGCAGCTGCT
 T C G A A C G T A G T C A G T C A C T G A G T C C T G A A T C G A G T C A C G T A C T G A T G C A C T G
A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RTCCGCAGCTGCG-
GACCCCCCGCTGCGC
 A C G T T C G A A C G T A G T C A G T C A C T G A G T C C T G A A T C G A G T C A C G T A C T G A T G C A C T G A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C